Hb_032920_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig32920: 29650-30384
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30260g
description POPTRDRAFT_1069712; hypothetical protein
nr
ID XP_002300263.2
description hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
swissprot
ID Q96289
description Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1
trembl
ID B9GI84
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30260g PE=4 SV=2
Gene Ontology
ID GO:0046872
description zinc finger protein zat10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34622: 29468-30655
cDNA
(Sanger)
(ID:Location)		 013_F06.ab1: 29644-30310 , 037_H16.ab1: 29898-30655

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_040 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
2 Hb_010142_040 0.0945005428 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
3 Hb_000827_090 0.1086123648 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
4 Hb_000988_020 0.1116589403 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
5 Hb_082225_010 0.113882669 - - DWNN domain isoform 2 [Theobroma cacao]
6 Hb_000805_150 0.121426034 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
7 Hb_002053_030 0.1265052602 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_031530_010 0.1288739917 - - DWNN domain isoform 2 [Theobroma cacao]
9 Hb_001787_070 0.1319013227 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
10 Hb_000836_160 0.1319665689 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
11 Hb_000373_250 0.1341180566 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
12 Hb_019026_030 0.1375269002 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
13 Hb_158926_010 0.1383831411 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_001894_060 0.1398339313 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
15 Hb_001404_010 0.141390336 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
16 Hb_005976_040 0.1414757427 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
17 Hb_007441_150 0.1421636485 - - Ankyrin repeat family protein [Theobroma cacao]
18 Hb_001213_140 0.1433531703 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_000221_280 0.1467497351 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
20 Hb_007120_010 0.1474145138 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]

Gene co-expression network

sample Hb_032920_040 Hb_032920_040 Hb_010142_040 Hb_010142_040 Hb_032920_040--Hb_010142_040 Hb_000827_090 Hb_000827_090 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_082225_010 Hb_082225_010 Hb_032920_040--Hb_082225_010 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_010142_040--Hb_000827_090 Hb_001213_140 Hb_001213_140 Hb_010142_040--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_000221_280 Hb_000221_280 Hb_010142_040--Hb_000221_280 Hb_000827_090--Hb_001213_140 Hb_000827_090--Hb_000777_020 Hb_000827_090--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000827_090--Hb_000731_020 Hb_007441_150 Hb_007441_150 Hb_000988_020--Hb_007441_150 Hb_000373_250 Hb_000373_250 Hb_000988_020--Hb_000373_250 Hb_000988_020--Hb_000805_150 Hb_078901_010 Hb_078901_010 Hb_000988_020--Hb_078901_010 Hb_005282_010 Hb_005282_010 Hb_000988_020--Hb_005282_010 Hb_031530_010 Hb_031530_010 Hb_082225_010--Hb_031530_010 Hb_001404_010 Hb_001404_010 Hb_082225_010--Hb_001404_010 Hb_082225_010--Hb_000827_090 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_000805_150--Hb_007441_150 Hb_000776_050 Hb_000776_050 Hb_002053_030--Hb_000776_050 Hb_000345_500 Hb_000345_500 Hb_002053_030--Hb_000345_500 Hb_006043_020 Hb_006043_020 Hb_002053_030--Hb_006043_020 Hb_002053_030--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_002053_030--Hb_001863_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19301 296.882 86.065 143.385 6.79179 4.3169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92565 17.4245 5.01402 2.89764 13.4863

CAGE analysis