Hb_002053_030

Information

Type -
Description -
Location Contig2053: 28710-31123
Sequence    

Annotation

kegg
ID rcu:RCOM_1681370
description leucine-rich repeat-containing protein, putative
nr
ID XP_002509636.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0DKH6
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID B9RBV2
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1681370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21153: 28947-29628 , PASA_asmbl_21154: 29669-29856 , PASA_asmbl_21156: 30679-31110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_030 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_000776_050 0.1025170986 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
3 Hb_000345_500 0.108117652 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
4 Hb_006043_020 0.1180431737 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
5 Hb_032920_040 0.1265052602 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
6 Hb_000373_250 0.1274448185 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
7 Hb_001863_270 0.1288743991 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
8 Hb_000805_150 0.1334099561 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
9 Hb_005976_040 0.1350356668 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
10 Hb_000532_030 0.1427791089 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
11 Hb_031108_010 0.143437782 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
12 Hb_006538_030 0.1442500646 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
13 Hb_019026_030 0.1459383815 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
14 Hb_000260_300 0.1468174629 - - calcium binding protein/cast, putative [Ricinus communis]
15 Hb_005282_010 0.1469294011 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
16 Hb_000805_040 0.1472293914 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_009476_110 0.1480041766 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
18 Hb_010142_040 0.1485138713 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
19 Hb_007120_010 0.1488922669 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
20 Hb_124677_020 0.1530431883 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_002053_030 Hb_002053_030 Hb_000776_050 Hb_000776_050 Hb_002053_030--Hb_000776_050 Hb_000345_500 Hb_000345_500 Hb_002053_030--Hb_000345_500 Hb_006043_020 Hb_006043_020 Hb_002053_030--Hb_006043_020 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_000373_250 Hb_000373_250 Hb_002053_030--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_002053_030--Hb_001863_270 Hb_000776_050--Hb_000345_500 Hb_009476_110 Hb_009476_110 Hb_000776_050--Hb_009476_110 Hb_017857_010 Hb_017857_010 Hb_000776_050--Hb_017857_010 Hb_031108_010 Hb_031108_010 Hb_000776_050--Hb_031108_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_000345_500--Hb_006043_020 Hb_006538_030 Hb_006538_030 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_000345_500--Hb_001863_270 Hb_005976_040 Hb_005976_040 Hb_006043_020--Hb_005976_040 Hb_000260_300 Hb_000260_300 Hb_006043_020--Hb_000260_300 Hb_018563_020 Hb_018563_020 Hb_006043_020--Hb_018563_020 Hb_006043_020--Hb_006538_030 Hb_010142_040 Hb_010142_040 Hb_032920_040--Hb_010142_040 Hb_000827_090 Hb_000827_090 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_082225_010 Hb_082225_010 Hb_032920_040--Hb_082225_010 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_007120_010 Hb_007120_010 Hb_000373_250--Hb_007120_010 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060 Hb_000805_040 Hb_000805_040 Hb_001863_270--Hb_000805_040 Hb_001863_270--Hb_007120_010 Hb_001989_060 Hb_001989_060 Hb_001863_270--Hb_001989_060 Hb_001863_270--Hb_000373_250 Hb_011360_090 Hb_011360_090 Hb_001863_270--Hb_011360_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245412 20.2417 7.64901 9.31037 0.261642 0.291032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47077 1.32585 0.997028 1.35644 1.41306

CAGE analysis