Hb_000776_050

Information

Type -
Description -
Location Contig776: 71418-74273
Sequence    

Annotation

kegg
ID rcu:RCOM_1468610
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative (EC:2.4.1.186)
nr
ID XP_002514626.1
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
swissprot
ID Q8RU27
description Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1
trembl
ID B9RLK7
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative OS=Ricinus communis GN=RCOM_1468610 PE=4 SV=1
Gene Ontology
ID GO:0016866
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57793: 71405-74216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_050 0.0 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
2 Hb_002053_030 0.1025170986 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_000345_500 0.1085363954 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
4 Hb_009476_110 0.1095806892 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
5 Hb_017857_010 0.1147589215 - - -
6 Hb_031108_010 0.1166835494 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
7 Hb_000473_080 0.12568944 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
8 Hb_098160_010 0.1292322905 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_000805_040 0.1298375727 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_007382_100 0.1317891949 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_000038_040 0.1338201099 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
12 Hb_001898_010 0.1364316411 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
13 Hb_001318_140 0.1383769955 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
14 Hb_002876_070 0.1389316994 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
15 Hb_012787_040 0.1412170036 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
16 Hb_000853_100 0.1414128216 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
17 Hb_178658_010 0.1431662314 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
18 Hb_000087_100 0.1433562424 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
19 Hb_000373_250 0.1434901846 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
20 Hb_000532_030 0.1440514545 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000776_050 Hb_000776_050 Hb_002053_030 Hb_002053_030 Hb_000776_050--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000776_050--Hb_000345_500 Hb_009476_110 Hb_009476_110 Hb_000776_050--Hb_009476_110 Hb_017857_010 Hb_017857_010 Hb_000776_050--Hb_017857_010 Hb_031108_010 Hb_031108_010 Hb_000776_050--Hb_031108_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_002053_030--Hb_000345_500 Hb_006043_020 Hb_006043_020 Hb_002053_030--Hb_006043_020 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_000373_250 Hb_000373_250 Hb_002053_030--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_002053_030--Hb_001863_270 Hb_000345_500--Hb_006043_020 Hb_006538_030 Hb_006538_030 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_000345_500--Hb_001863_270 Hb_003633_150 Hb_003633_150 Hb_009476_110--Hb_003633_150 Hb_009476_110--Hb_031108_010 Hb_001898_010 Hb_001898_010 Hb_009476_110--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_009476_110--Hb_005375_070 Hb_003905_040 Hb_003905_040 Hb_009476_110--Hb_003905_040 Hb_017857_010--Hb_005375_070 Hb_006615_160 Hb_006615_160 Hb_017857_010--Hb_006615_160 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_007574_050 Hb_007574_050 Hb_017857_010--Hb_007574_050 Hb_017857_010--Hb_001898_010 Hb_124677_020 Hb_124677_020 Hb_031108_010--Hb_124677_020 Hb_001579_070 Hb_001579_070 Hb_031108_010--Hb_001579_070 Hb_155946_030 Hb_155946_030 Hb_031108_010--Hb_155946_030 Hb_000086_620 Hb_000086_620 Hb_031108_010--Hb_000086_620 Hb_000359_080 Hb_000359_080 Hb_000473_080--Hb_000359_080 Hb_000003_420 Hb_000003_420 Hb_000473_080--Hb_000003_420 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_073119_010 Hb_073119_010 Hb_000473_080--Hb_073119_010 Hb_000103_400 Hb_000103_400 Hb_000473_080--Hb_000103_400 Hb_002272_140 Hb_002272_140 Hb_000473_080--Hb_002272_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1356 217.83 82.3253 81.1769 3.72067 3.57819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65356 17.5392 10.1348 30.3583 20.6678

CAGE analysis