Hb_031108_010

Information

Type -
Description -
Location Contig31108: 3963-4676
Sequence    

Annotation

kegg
ID rcu:RCOM_1391250
description hypothetical protein
nr
ID XP_012072613.1
description PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
swissprot
ID O80683
description Calmodulin-binding protein 25 OS=Arabidopsis thaliana GN=CAMBP25 PE=1 SV=1
trembl
ID A0A067L166
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32949: 3897-4684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031108_010 0.0 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
2 Hb_009476_110 0.1165755642 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
3 Hb_000776_050 0.1166835494 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
4 Hb_124677_020 0.125997708 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
5 Hb_001579_070 0.1344716267 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
6 Hb_155946_030 0.1383467601 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
7 Hb_000086_620 0.1434246457 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
8 Hb_002053_030 0.143437782 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_001636_060 0.1437855125 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
10 Hb_000336_060 0.1447223008 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
11 Hb_000984_290 0.1473767954 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
12 Hb_001247_160 0.1478981511 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
13 Hb_001898_010 0.1479249234 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
14 Hb_003633_150 0.1488410603 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
15 Hb_001623_410 0.1500738014 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
16 Hb_002876_070 0.150987279 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
17 Hb_017857_010 0.153757075 - - -
18 Hb_002936_030 0.1542859413 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
19 Hb_000260_300 0.154501693 - - calcium binding protein/cast, putative [Ricinus communis]
20 Hb_001242_180 0.1564469729 - - choline/ethanolamine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_031108_010 Hb_031108_010 Hb_009476_110 Hb_009476_110 Hb_031108_010--Hb_009476_110 Hb_000776_050 Hb_000776_050 Hb_031108_010--Hb_000776_050 Hb_124677_020 Hb_124677_020 Hb_031108_010--Hb_124677_020 Hb_001579_070 Hb_001579_070 Hb_031108_010--Hb_001579_070 Hb_155946_030 Hb_155946_030 Hb_031108_010--Hb_155946_030 Hb_000086_620 Hb_000086_620 Hb_031108_010--Hb_000086_620 Hb_003633_150 Hb_003633_150 Hb_009476_110--Hb_003633_150 Hb_009476_110--Hb_000776_050 Hb_001898_010 Hb_001898_010 Hb_009476_110--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_009476_110--Hb_005375_070 Hb_003905_040 Hb_003905_040 Hb_009476_110--Hb_003905_040 Hb_002053_030 Hb_002053_030 Hb_000776_050--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000776_050--Hb_000345_500 Hb_017857_010 Hb_017857_010 Hb_000776_050--Hb_017857_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_000260_300 Hb_000260_300 Hb_124677_020--Hb_000260_300 Hb_002151_130 Hb_002151_130 Hb_124677_020--Hb_002151_130 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_124677_020--Hb_155946_030 Hb_011930_120 Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_001579_070--Hb_155946_030 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_000680_180 Hb_000680_180 Hb_001579_070--Hb_000680_180 Hb_000162_130 Hb_000162_130 Hb_155946_030--Hb_000162_130 Hb_155946_030--Hb_000260_300 Hb_007894_020 Hb_007894_020 Hb_155946_030--Hb_007894_020 Hb_001623_410 Hb_001623_410 Hb_000086_620--Hb_001623_410 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_001247_010 Hb_001247_010 Hb_000086_620--Hb_001247_010 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.75753 522.715 354.419 222.794 4.1687 6.46315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1685 55.5083 24.5675 80.6023 58.8884

CAGE analysis