Hb_022137_020

Information

Type transcription factor
Description TF Family: AP2
Location Contig22137: 3090-15267
Sequence    

Annotation

kegg
ID rcu:RCOM_1683570
description Dehydration-responsive element-binding protein 1F, putative
nr
ID XP_012087006.1
description PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
swissprot
ID Q9FJ93
description Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1
trembl
ID A0A067K136
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20670 PE=4 SV=1
Gene Ontology
ID GO:0003677
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22837: 2899-3178 , PASA_asmbl_22841: 14712-15042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022137_020 0.0 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
2 Hb_007894_020 0.0944728312 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
3 Hb_101058_020 0.0961883336 - - DWNN domain isoform 2 [Theobroma cacao]
4 Hb_158926_010 0.1107182419 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_002542_030 0.1165396525 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
6 Hb_124677_020 0.1184736167 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_001999_170 0.1225052329 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
8 Hb_000808_090 0.123622367 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
9 Hb_000164_160 0.1355515047 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
10 Hb_000336_060 0.1378845324 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
11 Hb_005054_330 0.1447969469 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
12 Hb_000260_300 0.1459230243 - - calcium binding protein/cast, putative [Ricinus communis]
13 Hb_000045_140 0.1459932299 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
14 Hb_008637_020 0.1468623609 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000819_020 0.1508412737 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
16 Hb_000665_090 0.1518676473 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001894_060 0.1548356846 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
18 Hb_000926_110 0.1561170579 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
19 Hb_029622_080 0.1562747587 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
20 Hb_000086_610 0.1600436349 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]

Gene co-expression network

sample Hb_022137_020 Hb_022137_020 Hb_007894_020 Hb_007894_020 Hb_022137_020--Hb_007894_020 Hb_101058_020 Hb_101058_020 Hb_022137_020--Hb_101058_020 Hb_158926_010 Hb_158926_010 Hb_022137_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_022137_020--Hb_002542_030 Hb_124677_020 Hb_124677_020 Hb_022137_020--Hb_124677_020 Hb_001999_170 Hb_001999_170 Hb_022137_020--Hb_001999_170 Hb_007894_020--Hb_101058_020 Hb_007894_020--Hb_158926_010 Hb_007894_020--Hb_002542_030 Hb_155946_030 Hb_155946_030 Hb_007894_020--Hb_155946_030 Hb_007894_020--Hb_124677_020 Hb_101058_020--Hb_158926_010 Hb_000665_090 Hb_000665_090 Hb_101058_020--Hb_000665_090 Hb_001894_060 Hb_001894_060 Hb_101058_020--Hb_001894_060 Hb_004079_040 Hb_004079_040 Hb_101058_020--Hb_004079_040 Hb_158926_010--Hb_001894_060 Hb_000808_090 Hb_000808_090 Hb_158926_010--Hb_000808_090 Hb_158926_010--Hb_004079_040 Hb_158926_010--Hb_000665_090 Hb_000164_160 Hb_000164_160 Hb_002542_030--Hb_000164_160 Hb_005054_330 Hb_005054_330 Hb_002542_030--Hb_005054_330 Hb_008637_020 Hb_008637_020 Hb_002542_030--Hb_008637_020 Hb_003207_230 Hb_003207_230 Hb_002542_030--Hb_003207_230 Hb_099188_010 Hb_099188_010 Hb_002542_030--Hb_099188_010 Hb_124953_010 Hb_124953_010 Hb_002542_030--Hb_124953_010 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_000260_300 Hb_000260_300 Hb_124677_020--Hb_000260_300 Hb_002151_130 Hb_002151_130 Hb_124677_020--Hb_002151_130 Hb_124677_020--Hb_001999_170 Hb_124677_020--Hb_155946_030 Hb_001310_010 Hb_001310_010 Hb_001999_170--Hb_001310_010 Hb_010964_010 Hb_010964_010 Hb_001999_170--Hb_010964_010 Hb_001999_170--Hb_000336_060 Hb_010126_030 Hb_010126_030 Hb_001999_170--Hb_010126_030 Hb_001999_170--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_001999_170--Hb_007858_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156574 9.84368 5.9238 3.33316 0.0189375 0.0708177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27587 0.235149 0.102857 0.187136 0.0382085

CAGE analysis