Hb_000665_090

Information

Type -
Description -
Location Contig665: 78644-79060
Sequence    

Annotation

kegg
ID rcu:RCOM_0922720
description hypothetical protein
nr
ID XP_002515467.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53188: 78237-79279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002066_050 0.0672892766 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
3 Hb_000714_080 0.0888498259 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
4 Hb_000808_090 0.0946382509 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
5 Hb_000925_110 0.1037443266 - - Spotted leaf protein, putative [Ricinus communis]
6 Hb_101058_020 0.1123203412 - - DWNN domain isoform 2 [Theobroma cacao]
7 Hb_000904_110 0.1124386163 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
8 Hb_007546_010 0.1132622073 - - unnamed protein product [Vitis vinifera]
9 Hb_116103_010 0.1153223201 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_091826_020 0.1165783321 - - hypothetical protein JCGZ_04975 [Jatropha curcas]
11 Hb_000627_130 0.1166075106 - - Polcalcin Jun o, putative [Ricinus communis]
12 Hb_002133_010 0.1185529429 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_000164_160 0.1226087831 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
14 Hb_158926_010 0.1227599787 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
15 Hb_001894_060 0.123874199 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
16 Hb_004724_310 0.1278545926 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
17 Hb_008963_010 0.1298730563 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
18 Hb_003060_150 0.1301288336 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_002542_030 0.1322462017 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
20 Hb_004612_020 0.1323887148 - - PREDICTED: tetraspanin-8-like [Populus euphratica]

Gene co-expression network

sample Hb_000665_090 Hb_000665_090 Hb_002066_050 Hb_002066_050 Hb_000665_090--Hb_002066_050 Hb_000714_080 Hb_000714_080 Hb_000665_090--Hb_000714_080 Hb_000808_090 Hb_000808_090 Hb_000665_090--Hb_000808_090 Hb_000925_110 Hb_000925_110 Hb_000665_090--Hb_000925_110 Hb_101058_020 Hb_101058_020 Hb_000665_090--Hb_101058_020 Hb_000904_110 Hb_000904_110 Hb_000665_090--Hb_000904_110 Hb_002066_050--Hb_000925_110 Hb_002066_050--Hb_000714_080 Hb_007546_010 Hb_007546_010 Hb_002066_050--Hb_007546_010 Hb_000627_130 Hb_000627_130 Hb_002066_050--Hb_000627_130 Hb_002066_050--Hb_000904_110 Hb_000714_080--Hb_000925_110 Hb_004724_310 Hb_004724_310 Hb_000714_080--Hb_004724_310 Hb_008963_010 Hb_008963_010 Hb_000714_080--Hb_008963_010 Hb_000714_080--Hb_000904_110 Hb_029622_080 Hb_029622_080 Hb_000808_090--Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_000808_090--Hb_032260_100 Hb_000656_350 Hb_000656_350 Hb_000808_090--Hb_000656_350 Hb_000808_090--Hb_000627_130 Hb_124953_010 Hb_124953_010 Hb_000808_090--Hb_124953_010 Hb_000925_110--Hb_000656_350 Hb_000925_110--Hb_004724_310 Hb_096930_010 Hb_096930_010 Hb_000925_110--Hb_096930_010 Hb_158926_010 Hb_158926_010 Hb_101058_020--Hb_158926_010 Hb_007894_020 Hb_007894_020 Hb_101058_020--Hb_007894_020 Hb_022137_020 Hb_022137_020 Hb_101058_020--Hb_022137_020 Hb_001894_060 Hb_001894_060 Hb_101058_020--Hb_001894_060 Hb_004079_040 Hb_004079_040 Hb_101058_020--Hb_004079_040 Hb_116103_010 Hb_116103_010 Hb_000904_110--Hb_116103_010 Hb_064885_010 Hb_064885_010 Hb_000904_110--Hb_064885_010 Hb_173029_010 Hb_173029_010 Hb_000904_110--Hb_173029_010 Hb_004924_020 Hb_004924_020 Hb_000904_110--Hb_004924_020 Hb_002849_010 Hb_002849_010 Hb_000904_110--Hb_002849_010 Hb_000668_220 Hb_000668_220 Hb_000904_110--Hb_000668_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48389 646.207 486.081 351.967 1.20703 1.59732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84208 7.08963 2.11027 4.36876 34.799

CAGE analysis