Hb_096930_010

Information

Type -
Description -
Location Contig96930: 4595-4903
Sequence    

Annotation

kegg
ID pop:POPTR_0017s015602
description hypothetical protein
nr
ID KDP43110.1
description hypothetical protein JCGZ_27059 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LF20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27059 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63937: 4538-4905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096930_010 0.0 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
2 Hb_000925_110 0.1017565226 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_000656_350 0.1136903044 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
4 Hb_004724_310 0.114596667 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
5 Hb_032260_100 0.1170483972 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
6 Hb_001310_080 0.1177521236 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
7 Hb_000836_220 0.1185136707 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_002218_080 0.1203782618 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_001832_070 0.1222994358 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
10 Hb_029622_080 0.1247312735 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
11 Hb_001104_270 0.1249209452 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
12 Hb_008948_110 0.1262880989 - - PREDICTED: peroxidase 25 [Jatropha curcas]
13 Hb_000808_090 0.1263858657 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
14 Hb_001894_060 0.1272902448 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
15 Hb_007441_150 0.1280101151 - - Ankyrin repeat family protein [Theobroma cacao]
16 Hb_000221_280 0.1289835656 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
17 Hb_000024_020 0.1290267732 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
18 Hb_004112_050 0.1333317009 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_008963_010 0.1338350453 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
20 Hb_113396_010 0.1362335026 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_096930_010 Hb_096930_010 Hb_000925_110 Hb_000925_110 Hb_096930_010--Hb_000925_110 Hb_000656_350 Hb_000656_350 Hb_096930_010--Hb_000656_350 Hb_004724_310 Hb_004724_310 Hb_096930_010--Hb_004724_310 Hb_032260_100 Hb_032260_100 Hb_096930_010--Hb_032260_100 Hb_001310_080 Hb_001310_080 Hb_096930_010--Hb_001310_080 Hb_000836_220 Hb_000836_220 Hb_096930_010--Hb_000836_220 Hb_002066_050 Hb_002066_050 Hb_000925_110--Hb_002066_050 Hb_000925_110--Hb_000656_350 Hb_000925_110--Hb_004724_310 Hb_000714_080 Hb_000714_080 Hb_000925_110--Hb_000714_080 Hb_000665_090 Hb_000665_090 Hb_000925_110--Hb_000665_090 Hb_000656_350--Hb_032260_100 Hb_029622_080 Hb_029622_080 Hb_000656_350--Hb_029622_080 Hb_000571_030 Hb_000571_030 Hb_000656_350--Hb_000571_030 Hb_000032_150 Hb_000032_150 Hb_000656_350--Hb_000032_150 Hb_000808_090 Hb_000808_090 Hb_000656_350--Hb_000808_090 Hb_006916_220 Hb_006916_220 Hb_004724_310--Hb_006916_220 Hb_000996_100 Hb_000996_100 Hb_004724_310--Hb_000996_100 Hb_008963_010 Hb_008963_010 Hb_004724_310--Hb_008963_010 Hb_000731_020 Hb_000731_020 Hb_004724_310--Hb_000731_020 Hb_004724_310--Hb_000714_080 Hb_032260_100--Hb_029622_080 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_032260_100--Hb_000808_090 Hb_007441_150 Hb_007441_150 Hb_032260_100--Hb_007441_150 Hb_032260_100--Hb_000571_030 Hb_113396_010 Hb_113396_010 Hb_001310_080--Hb_113396_010 Hb_002218_080 Hb_002218_080 Hb_001310_080--Hb_002218_080 Hb_026048_030 Hb_026048_030 Hb_001310_080--Hb_026048_030 Hb_004112_050 Hb_004112_050 Hb_001310_080--Hb_004112_050 Hb_000024_020 Hb_000024_020 Hb_001310_080--Hb_000024_020 Hb_001518_030 Hb_001518_030 Hb_001310_080--Hb_001518_030 Hb_001198_160 Hb_001198_160 Hb_000836_220--Hb_001198_160 Hb_002370_060 Hb_002370_060 Hb_000836_220--Hb_002370_060 Hb_000054_140 Hb_000054_140 Hb_000836_220--Hb_000054_140 Hb_177215_020 Hb_177215_020 Hb_000836_220--Hb_177215_020 Hb_006573_280 Hb_006573_280 Hb_000836_220--Hb_006573_280 Hb_000028_330 Hb_000028_330 Hb_000836_220--Hb_000028_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 36.1188 16.2328 18.5157 0 0.137788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.34782 0 0 1.64368 2.5794

CAGE analysis