Hb_000996_100

Information

Type -
Description -
Location Contig996: 120145-120509
Sequence    

Annotation

kegg
ID tcc:TCM_016220
description Nucleotide binding, putative
nr
ID XP_007040180.1
description Nucleotide binding, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G559
description Nucleotide binding, putative OS=Theobroma cacao GN=TCM_016220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_100 0.0 - - Nucleotide binding, putative [Theobroma cacao]
2 Hb_004724_310 0.0856877785 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
3 Hb_138705_010 0.1005076615 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
4 Hb_006916_220 0.1007042552 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
5 Hb_008963_010 0.1144442801 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
6 Hb_004924_020 0.1186352357 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_003968_010 0.1230780768 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_001511_200 0.1312342745 - - Embryonic abundant protein, putative [Ricinus communis]
9 Hb_000668_220 0.133420089 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
10 Hb_158110_010 0.1347158226 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
11 Hb_002049_030 0.1378129077 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
12 Hb_000373_220 0.1395363514 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_128851_020 0.1457579756 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001677_140 0.149108946 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
15 Hb_173029_010 0.1502444224 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000925_110 0.1509578627 - - Spotted leaf protein, putative [Ricinus communis]
17 Hb_002006_110 0.1512820129 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
18 Hb_010136_020 0.1513217115 - - stress-induced receptor-like kinase [Medicago truncatula]
19 Hb_001019_140 0.1524688475 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_053935_010 0.1526844755 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000996_100 Hb_000996_100 Hb_004724_310 Hb_004724_310 Hb_000996_100--Hb_004724_310 Hb_138705_010 Hb_138705_010 Hb_000996_100--Hb_138705_010 Hb_006916_220 Hb_006916_220 Hb_000996_100--Hb_006916_220 Hb_008963_010 Hb_008963_010 Hb_000996_100--Hb_008963_010 Hb_004924_020 Hb_004924_020 Hb_000996_100--Hb_004924_020 Hb_003968_010 Hb_003968_010 Hb_000996_100--Hb_003968_010 Hb_004724_310--Hb_006916_220 Hb_004724_310--Hb_008963_010 Hb_000925_110 Hb_000925_110 Hb_004724_310--Hb_000925_110 Hb_000731_020 Hb_000731_020 Hb_004724_310--Hb_000731_020 Hb_000714_080 Hb_000714_080 Hb_004724_310--Hb_000714_080 Hb_002049_030 Hb_002049_030 Hb_138705_010--Hb_002049_030 Hb_001019_140 Hb_001019_140 Hb_138705_010--Hb_001019_140 Hb_138705_010--Hb_003968_010 Hb_004096_140 Hb_004096_140 Hb_138705_010--Hb_004096_140 Hb_048937_010 Hb_048937_010 Hb_138705_010--Hb_048937_010 Hb_004724_290 Hb_004724_290 Hb_006916_220--Hb_004724_290 Hb_002006_110 Hb_002006_110 Hb_006916_220--Hb_002006_110 Hb_019978_010 Hb_019978_010 Hb_006916_220--Hb_019978_010 Hb_010136_020 Hb_010136_020 Hb_006916_220--Hb_010136_020 Hb_184752_010 Hb_184752_010 Hb_006916_220--Hb_184752_010 Hb_008963_010--Hb_004924_020 Hb_008963_010--Hb_000714_080 Hb_091826_020 Hb_091826_020 Hb_008963_010--Hb_091826_020 Hb_158110_010 Hb_158110_010 Hb_008963_010--Hb_158110_010 Hb_116103_010 Hb_116103_010 Hb_004924_020--Hb_116103_010 Hb_000904_110 Hb_000904_110 Hb_004924_020--Hb_000904_110 Hb_173029_010 Hb_173029_010 Hb_004924_020--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_004924_020--Hb_000668_220 Hb_004924_020--Hb_091826_020 Hb_008725_030 Hb_008725_030 Hb_003968_010--Hb_008725_030 Hb_003968_010--Hb_004096_140 Hb_096974_010 Hb_096974_010 Hb_003968_010--Hb_096974_010 Hb_003050_170 Hb_003050_170 Hb_003968_010--Hb_003050_170 Hb_003968_010--Hb_001019_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 69.23 42.4083 42.2856 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.82765 0

CAGE analysis