Hb_113396_010

Information

Type -
Description -
Location Contig113396: 1678-4419
Sequence    

Annotation

kegg
ID rcu:RCOM_0841220
description cytochrome P450, putative (EC:1.14.13.88)
nr
ID XP_002528647.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID P37122
description Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1
trembl
ID B9SRM8
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0841220 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 76a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03986: 2770-3967 , PASA_asmbl_03987: 3968-4395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113396_010 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_001310_080 0.0474272396 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
3 Hb_002218_080 0.0758274068 - - Ankyrin repeat family protein, putative [Theobroma cacao]
4 Hb_026048_030 0.0791389563 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000365_190 0.0807127019 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
6 Hb_000024_020 0.0835391397 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
7 Hb_004112_050 0.0963027142 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_006573_280 0.1067637651 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
9 Hb_001518_030 0.106829235 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_013691_060 0.1197248032 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
11 Hb_002725_080 0.1209905737 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_024650_010 0.1221989089 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
13 Hb_000060_100 0.1227976072 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
14 Hb_001104_270 0.1228135058 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
15 Hb_002110_050 0.1239849454 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000742_260 0.1240216446 - - hypothetical protein RCOM_1336320 [Ricinus communis]
17 Hb_001677_120 0.1247048304 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_004724_300 0.1247771046 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
19 Hb_005694_150 0.1257838176 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_000375_150 0.1259044053 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_113396_010 Hb_113396_010 Hb_001310_080 Hb_001310_080 Hb_113396_010--Hb_001310_080 Hb_002218_080 Hb_002218_080 Hb_113396_010--Hb_002218_080 Hb_026048_030 Hb_026048_030 Hb_113396_010--Hb_026048_030 Hb_000365_190 Hb_000365_190 Hb_113396_010--Hb_000365_190 Hb_000024_020 Hb_000024_020 Hb_113396_010--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_113396_010--Hb_004112_050 Hb_001310_080--Hb_002218_080 Hb_001310_080--Hb_026048_030 Hb_001310_080--Hb_004112_050 Hb_001310_080--Hb_000024_020 Hb_001518_030 Hb_001518_030 Hb_001310_080--Hb_001518_030 Hb_002110_050 Hb_002110_050 Hb_002218_080--Hb_002110_050 Hb_002548_020 Hb_002548_020 Hb_002218_080--Hb_002548_020 Hb_002218_080--Hb_000024_020 Hb_002218_080--Hb_004112_050 Hb_026048_030--Hb_001518_030 Hb_000028_330 Hb_000028_330 Hb_026048_030--Hb_000028_330 Hb_024650_010 Hb_024650_010 Hb_026048_030--Hb_024650_010 Hb_026048_030--Hb_000365_190 Hb_000742_260 Hb_000742_260 Hb_000365_190--Hb_000742_260 Hb_000365_190--Hb_001310_080 Hb_011101_010 Hb_011101_010 Hb_000365_190--Hb_011101_010 Hb_004586_230 Hb_004586_230 Hb_000365_190--Hb_004586_230 Hb_007441_150 Hb_007441_150 Hb_000024_020--Hb_007441_150 Hb_000567_110 Hb_000567_110 Hb_000024_020--Hb_000567_110 Hb_000024_020--Hb_004112_050 Hb_004724_300 Hb_004724_300 Hb_004112_050--Hb_004724_300 Hb_007102_010 Hb_007102_010 Hb_004112_050--Hb_007102_010 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 64.3038 19.9668 40.0624 0.129757 0.0197687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0770176 0.0403979 0 3.08144 12.6321

CAGE analysis