Hb_004112_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4112: 30982-35061
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40694: 30947-34513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004112_050 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_001310_080 0.0834889188 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
3 Hb_004724_300 0.093440604 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
4 Hb_002218_080 0.0936725328 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_007102_010 0.0944057952 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
6 Hb_007007_030 0.0957339348 - - conserved hypothetical protein [Ricinus communis]
7 Hb_113396_010 0.0963027142 - - cytochrome P450, putative [Ricinus communis]
8 Hb_006573_280 0.0967404364 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
9 Hb_001104_270 0.0968828589 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
10 Hb_008948_110 0.1008370786 - - PREDICTED: peroxidase 25 [Jatropha curcas]
11 Hb_134022_010 0.1014157301 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_000024_020 0.1022021406 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
13 Hb_004393_030 0.1032279241 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
14 Hb_021254_020 0.1085681569 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_001821_050 0.1109012138 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
16 Hb_000836_220 0.1112987189 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_001677_120 0.1127658551 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_000567_110 0.1131998941 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
19 Hb_008810_030 0.1185101288 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
20 Hb_002725_080 0.1196458738 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_004112_050 Hb_004112_050 Hb_001310_080 Hb_001310_080 Hb_004112_050--Hb_001310_080 Hb_004724_300 Hb_004724_300 Hb_004112_050--Hb_004724_300 Hb_002218_080 Hb_002218_080 Hb_004112_050--Hb_002218_080 Hb_007102_010 Hb_007102_010 Hb_004112_050--Hb_007102_010 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030 Hb_113396_010 Hb_113396_010 Hb_004112_050--Hb_113396_010 Hb_001310_080--Hb_113396_010 Hb_001310_080--Hb_002218_080 Hb_026048_030 Hb_026048_030 Hb_001310_080--Hb_026048_030 Hb_000024_020 Hb_000024_020 Hb_001310_080--Hb_000024_020 Hb_001518_030 Hb_001518_030 Hb_001310_080--Hb_001518_030 Hb_001821_050 Hb_001821_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_004724_300--Hb_007102_010 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120 Hb_002110_050 Hb_002110_050 Hb_002218_080--Hb_002110_050 Hb_002218_080--Hb_113396_010 Hb_002548_020 Hb_002548_020 Hb_002218_080--Hb_002548_020 Hb_002218_080--Hb_000024_020 Hb_004837_110 Hb_004837_110 Hb_007102_010--Hb_004837_110 Hb_007102_010--Hb_001821_050 Hb_002890_320 Hb_002890_320 Hb_007102_010--Hb_002890_320 Hb_002375_080 Hb_002375_080 Hb_007102_010--Hb_002375_080 Hb_004393_030 Hb_004393_030 Hb_007007_030--Hb_004393_030 Hb_000032_090 Hb_000032_090 Hb_007007_030--Hb_000032_090 Hb_001254_020 Hb_001254_020 Hb_007007_030--Hb_001254_020 Hb_000985_140 Hb_000985_140 Hb_007007_030--Hb_000985_140 Hb_007007_030--Hb_004724_300 Hb_113396_010--Hb_026048_030 Hb_000365_190 Hb_000365_190 Hb_113396_010--Hb_000365_190 Hb_113396_010--Hb_000024_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017763 6.32661 2.79249 3.08485 0.0332843 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0405704 0 0 0.460229 1.45302

CAGE analysis