Hb_004079_040

Information

Type -
Description -
Location Contig4079: 40945-41431
Sequence    

Annotation

kegg
ID rcu:RCOM_1053260
description hypothetical protein
nr
ID KDP33656.1
description hypothetical protein JCGZ_07227 [Jatropha curcas]
swissprot
ID O82337
description Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1
trembl
ID A0A067KBQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07227 PE=4 SV=1
Gene Ontology
ID GO:0005886
description arabinogalactan protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40357: 40880-41404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_040 0.0 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
2 Hb_000358_170 0.11155328 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
3 Hb_158926_010 0.1119950336 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_101058_020 0.12267466 - - DWNN domain isoform 2 [Theobroma cacao]
5 Hb_001894_060 0.1280485352 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
6 Hb_000127_200 0.1367809455 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
7 Hb_000665_090 0.1441382137 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003209_120 0.1464580445 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
9 Hb_000827_090 0.150396684 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
10 Hb_032920_040 0.1579696873 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
11 Hb_010369_010 0.1603205846 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001257_120 0.1624965506 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
13 Hb_007894_020 0.1646701584 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
14 Hb_000731_020 0.1649717245 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
15 Hb_000777_020 0.1658260701 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
16 Hb_007441_150 0.1659437331 - - Ankyrin repeat family protein [Theobroma cacao]
17 Hb_001213_140 0.1659958089 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
18 Hb_000925_110 0.1669253459 - - Spotted leaf protein, putative [Ricinus communis]
19 Hb_010142_040 0.1677735953 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
20 Hb_005976_040 0.1677779094 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]

Gene co-expression network

sample Hb_004079_040 Hb_004079_040 Hb_000358_170 Hb_000358_170 Hb_004079_040--Hb_000358_170 Hb_158926_010 Hb_158926_010 Hb_004079_040--Hb_158926_010 Hb_101058_020 Hb_101058_020 Hb_004079_040--Hb_101058_020 Hb_001894_060 Hb_001894_060 Hb_004079_040--Hb_001894_060 Hb_000127_200 Hb_000127_200 Hb_004079_040--Hb_000127_200 Hb_000665_090 Hb_000665_090 Hb_004079_040--Hb_000665_090 Hb_001257_120 Hb_001257_120 Hb_000358_170--Hb_001257_120 Hb_000358_170--Hb_000127_200 Hb_010369_010 Hb_010369_010 Hb_000358_170--Hb_010369_010 Hb_001198_170 Hb_001198_170 Hb_000358_170--Hb_001198_170 Hb_003209_120 Hb_003209_120 Hb_000358_170--Hb_003209_120 Hb_158926_010--Hb_101058_020 Hb_158926_010--Hb_001894_060 Hb_000808_090 Hb_000808_090 Hb_158926_010--Hb_000808_090 Hb_022137_020 Hb_022137_020 Hb_158926_010--Hb_022137_020 Hb_158926_010--Hb_000665_090 Hb_007894_020 Hb_007894_020 Hb_101058_020--Hb_007894_020 Hb_101058_020--Hb_022137_020 Hb_101058_020--Hb_000665_090 Hb_101058_020--Hb_001894_060 Hb_007441_150 Hb_007441_150 Hb_001894_060--Hb_007441_150 Hb_001894_060--Hb_000808_090 Hb_029622_080 Hb_029622_080 Hb_001894_060--Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_001894_060--Hb_032260_100 Hb_000127_200--Hb_001198_170 Hb_002548_020 Hb_002548_020 Hb_000127_200--Hb_002548_020 Hb_000127_200--Hb_001257_120 Hb_004241_100 Hb_004241_100 Hb_000127_200--Hb_004241_100 Hb_000127_200--Hb_001894_060 Hb_002066_050 Hb_002066_050 Hb_000665_090--Hb_002066_050 Hb_000714_080 Hb_000714_080 Hb_000665_090--Hb_000714_080 Hb_000665_090--Hb_000808_090 Hb_000925_110 Hb_000925_110 Hb_000665_090--Hb_000925_110 Hb_000904_110 Hb_000904_110 Hb_000665_090--Hb_000904_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0927224 410.443 219.354 275.871 0.0875358 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08511 31.6793 9.80814 3.4499 17.0288

CAGE analysis