Hb_003209_120

Information

Type -
Description -
Location Contig3209: 72248-73483
Sequence    

Annotation

kegg
ID tcc:TCM_021336
description Xyloglucan endotransglucosylase/hydrolase family protein
nr
ID XP_012074089.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
swissprot
ID Q38857
description Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1
trembl
ID A0A0D2NWM3
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G052400 PE=4 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33928: 72284-73450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_120 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
2 Hb_000358_170 0.1097174063 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
3 Hb_003209_040 0.1246284555 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
4 Hb_001115_100 0.1259075808 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
5 Hb_027905_010 0.1353652496 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_000777_020 0.1389061591 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
7 Hb_001257_120 0.1407502261 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
8 Hb_010369_010 0.1412576127 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001195_650 0.1440504905 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
10 Hb_001404_030 0.1441436702 - - DWNN domain isoform 3 [Theobroma cacao]
11 Hb_108670_010 0.1464413815 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_004079_040 0.1464580445 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
13 Hb_000111_200 0.1481116615 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
14 Hb_000827_090 0.1487612488 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
15 Hb_000021_010 0.1534780781 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000186_320 0.1587104131 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_004241_200 0.1628022819 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
18 Hb_017549_010 0.1645121415 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_001198_170 0.1680710308 - - -
20 Hb_001221_050 0.168207348 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_120 Hb_003209_120 Hb_000358_170 Hb_000358_170 Hb_003209_120--Hb_000358_170 Hb_003209_040 Hb_003209_040 Hb_003209_120--Hb_003209_040 Hb_001115_100 Hb_001115_100 Hb_003209_120--Hb_001115_100 Hb_027905_010 Hb_027905_010 Hb_003209_120--Hb_027905_010 Hb_000777_020 Hb_000777_020 Hb_003209_120--Hb_000777_020 Hb_001257_120 Hb_001257_120 Hb_003209_120--Hb_001257_120 Hb_000358_170--Hb_001257_120 Hb_000127_200 Hb_000127_200 Hb_000358_170--Hb_000127_200 Hb_010369_010 Hb_010369_010 Hb_000358_170--Hb_010369_010 Hb_001198_170 Hb_001198_170 Hb_000358_170--Hb_001198_170 Hb_004079_040 Hb_004079_040 Hb_000358_170--Hb_004079_040 Hb_003209_040--Hb_027905_010 Hb_004241_200 Hb_004241_200 Hb_003209_040--Hb_004241_200 Hb_001195_650 Hb_001195_650 Hb_003209_040--Hb_001195_650 Hb_019026_030 Hb_019026_030 Hb_003209_040--Hb_019026_030 Hb_008406_030 Hb_008406_030 Hb_003209_040--Hb_008406_030 Hb_017549_010 Hb_017549_010 Hb_001115_100--Hb_017549_010 Hb_002186_030 Hb_002186_030 Hb_001115_100--Hb_002186_030 Hb_004374_170 Hb_004374_170 Hb_001115_100--Hb_004374_170 Hb_001221_050 Hb_001221_050 Hb_001115_100--Hb_001221_050 Hb_001675_350 Hb_001675_350 Hb_001115_100--Hb_001675_350 Hb_027905_010--Hb_000777_020 Hb_027905_010--Hb_001195_650 Hb_000827_090 Hb_000827_090 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_027905_010--Hb_019026_030 Hb_001213_140 Hb_001213_140 Hb_000777_020--Hb_001213_140 Hb_000777_020--Hb_000827_090 Hb_000777_020--Hb_010142_040 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_001257_120--Hb_001198_170 Hb_172240_010 Hb_172240_010 Hb_001257_120--Hb_172240_010 Hb_002811_320 Hb_002811_320 Hb_001257_120--Hb_002811_320 Hb_155015_020 Hb_155015_020 Hb_001257_120--Hb_155015_020 Hb_098175_010 Hb_098175_010 Hb_001257_120--Hb_098175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169605 60.5117 30.7729 72.5779 0.0206216 0.0222902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54035 3.07113 0.273463 0.683527 3.72451

CAGE analysis