Hb_003209_040

Information

Type -
Description -
Location Contig3209: 44088-45344
Sequence    

Annotation

kegg
ID pda:103715631
description probable xyloglucan endotransglucosylase/hydrolase protein 23
nr
ID XP_012440766.1
description PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
swissprot
ID Q38907
description Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2
trembl
ID A0A0D2QSI6
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G337400 PE=4 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33927: 44103-72415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_040 0.0 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
2 Hb_027905_010 0.112068005 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_004241_200 0.1124764084 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
4 Hb_001195_650 0.1144070714 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
5 Hb_019026_030 0.117088023 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
6 Hb_003209_120 0.1246284555 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
7 Hb_008406_030 0.1352916311 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
8 Hb_000777_020 0.1380291972 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
9 Hb_000201_070 0.1401707183 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
10 Hb_000983_110 0.1457647494 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_000742_260 0.1457982132 - - hypothetical protein RCOM_1336320 [Ricinus communis]
12 Hb_000827_090 0.1501375081 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
13 Hb_001257_120 0.1549289518 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
14 Hb_000358_170 0.1556344183 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
15 Hb_001213_140 0.1564066303 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
16 Hb_004143_050 0.1571075513 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
17 Hb_010267_030 0.1599618334 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
18 Hb_172240_010 0.1617271107 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
19 Hb_012395_260 0.1656182455 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
20 Hb_000638_180 0.1666869687 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]

Gene co-expression network

sample Hb_003209_040 Hb_003209_040 Hb_027905_010 Hb_027905_010 Hb_003209_040--Hb_027905_010 Hb_004241_200 Hb_004241_200 Hb_003209_040--Hb_004241_200 Hb_001195_650 Hb_001195_650 Hb_003209_040--Hb_001195_650 Hb_019026_030 Hb_019026_030 Hb_003209_040--Hb_019026_030 Hb_003209_120 Hb_003209_120 Hb_003209_040--Hb_003209_120 Hb_008406_030 Hb_008406_030 Hb_003209_040--Hb_008406_030 Hb_000777_020 Hb_000777_020 Hb_027905_010--Hb_000777_020 Hb_027905_010--Hb_001195_650 Hb_000827_090 Hb_000827_090 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_027905_010--Hb_019026_030 Hb_004241_200--Hb_008406_030 Hb_004241_200--Hb_001195_650 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_001195_650--Hb_000983_110 Hb_001195_650--Hb_000777_020 Hb_004143_050 Hb_004143_050 Hb_019026_030--Hb_004143_050 Hb_001213_140 Hb_001213_140 Hb_019026_030--Hb_001213_140 Hb_019026_030--Hb_000777_020 Hb_019026_030--Hb_000827_090 Hb_000358_170 Hb_000358_170 Hb_003209_120--Hb_000358_170 Hb_001115_100 Hb_001115_100 Hb_003209_120--Hb_001115_100 Hb_003209_120--Hb_027905_010 Hb_003209_120--Hb_000777_020 Hb_001257_120 Hb_001257_120 Hb_003209_120--Hb_001257_120 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001472_140 Hb_001472_140 Hb_008406_030--Hb_001472_140 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_008406_030--Hb_027905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105507 62.7268 16.343 64.1208 0.193667 0.204779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06911 2.89327 0.869652 0.551675 8.77731

CAGE analysis