Hb_008406_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig8406: 30320-30961
Sequence    

Annotation

kegg
ID rcu:RCOM_1173260
description Ethylene-responsive transcription factor, putative
nr
ID AFX83939.1
description AP2/ERF super family protein [Hevea brasiliensis]
swissprot
ID Q9FE67
description Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1
trembl
ID S4TAK8
description AP2/ERF super family protein OS=Hevea brasiliensis GN=ERF1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60101: 29773-31208
cDNA
(Sanger)
(ID:Location)		 009_L02r.ab1: 29773-30427 , 036_A12.ab1: 30263-30941 , 049_H24.ab1: 30305-30616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_030 0.0 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
2 Hb_004241_200 0.073822092 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
3 Hb_009557_050 0.1114654957 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
4 Hb_001472_140 0.1209922751 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
5 Hb_001195_650 0.122346617 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
6 Hb_004297_080 0.1225246414 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_027905_010 0.1309330761 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_003209_040 0.1352916311 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
9 Hb_049915_010 0.1423460225 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
10 Hb_000638_180 0.1443646924 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
11 Hb_000003_760 0.1483157145 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
12 Hb_003209_090 0.1508324032 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
13 Hb_019026_030 0.1550801629 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
14 Hb_000365_280 0.1557137868 - - calcium binding protein/cast, putative [Ricinus communis]
15 Hb_182970_010 0.1563811762 - - calmodulin-binding protein 60-D [Populus trichocarpa]
16 Hb_000692_230 0.1569601637 - - phospholipase d delta, putative [Ricinus communis]
17 Hb_000983_110 0.1627768824 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
18 Hb_000733_090 0.1629909563 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
19 Hb_002026_050 0.1635108953 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
20 Hb_023768_020 0.1679839833 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008406_030 Hb_008406_030 Hb_004241_200 Hb_004241_200 Hb_008406_030--Hb_004241_200 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001472_140 Hb_001472_140 Hb_008406_030--Hb_001472_140 Hb_001195_650 Hb_001195_650 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_004241_200--Hb_001195_650 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_009557_050--Hb_004241_200 Hb_000003_760 Hb_000003_760 Hb_009557_050--Hb_000003_760 Hb_009557_050--Hb_001472_140 Hb_002234_130 Hb_002234_130 Hb_009557_050--Hb_002234_130 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_000836_210 Hb_000836_210 Hb_001472_140--Hb_000836_210 Hb_001472_140--Hb_004297_080 Hb_002875_070 Hb_002875_070 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_001195_650--Hb_027905_010 Hb_001195_650--Hb_003209_040 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_001195_650--Hb_000983_110 Hb_000777_020 Hb_000777_020 Hb_001195_650--Hb_000777_020 Hb_000666_120 Hb_000666_120 Hb_004297_080--Hb_000666_120 Hb_002233_080 Hb_002233_080 Hb_004297_080--Hb_002233_080 Hb_000210_160 Hb_000210_160 Hb_004297_080--Hb_000210_160 Hb_001675_310 Hb_001675_310 Hb_004297_080--Hb_001675_310 Hb_027905_010--Hb_000777_020 Hb_027905_010--Hb_003209_040 Hb_000827_090 Hb_000827_090 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_027905_010--Hb_019026_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5212 470.692 173.8 619.863 4.36664 13.2625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3932 50.4603 18.4019 37.4433 92.6151

CAGE analysis