Hb_000666_120

Information

Type -
Description -
Location Contig666: 263035-267052
Sequence    

Annotation

kegg
ID rcu:RCOM_0096650
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002532709.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID O65440
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3
trembl
ID B9T390
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0096650 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like serine threonine-protein kinase bam3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53253: 263156-267268 , PASA_asmbl_53255: 266361-266515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000666_120 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_001675_310 0.1214186949 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
3 Hb_004297_080 0.1232468879 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_001999_200 0.1374316083 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_000403_100 0.1376337148 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
6 Hb_007292_050 0.1457454959 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
7 Hb_002311_110 0.1464303091 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009476_160 0.1468774374 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
9 Hb_002233_080 0.1476142203 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
10 Hb_000320_270 0.1541930738 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
11 Hb_004586_230 0.1562571826 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000836_210 0.1577526595 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
13 Hb_000567_220 0.1587499878 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
14 Hb_000210_160 0.1649083908 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_003435_040 0.1659748702 - - tonoplast intrinsic protein [Hevea brasiliensis]
16 Hb_002598_040 0.1670072313 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
17 Hb_005056_100 0.1672242556 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
18 Hb_000329_170 0.1680879038 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
19 Hb_002510_100 0.1689712232 - - Root phototropism protein, putative [Ricinus communis]
20 Hb_002004_010 0.169819947 - - CBL-interacting protein kinase 9 [Populus trichocarpa]

Gene co-expression network

sample Hb_000666_120 Hb_000666_120 Hb_001675_310 Hb_001675_310 Hb_000666_120--Hb_001675_310 Hb_004297_080 Hb_004297_080 Hb_000666_120--Hb_004297_080 Hb_001999_200 Hb_001999_200 Hb_000666_120--Hb_001999_200 Hb_000403_100 Hb_000403_100 Hb_000666_120--Hb_000403_100 Hb_007292_050 Hb_007292_050 Hb_000666_120--Hb_007292_050 Hb_002311_110 Hb_002311_110 Hb_000666_120--Hb_002311_110 Hb_000210_160 Hb_000210_160 Hb_001675_310--Hb_000210_160 Hb_003849_200 Hb_003849_200 Hb_001675_310--Hb_003849_200 Hb_000563_630 Hb_000563_630 Hb_001675_310--Hb_000563_630 Hb_002233_080 Hb_002233_080 Hb_001675_310--Hb_002233_080 Hb_003435_040 Hb_003435_040 Hb_001675_310--Hb_003435_040 Hb_001472_140 Hb_001472_140 Hb_004297_080--Hb_001472_140 Hb_008406_030 Hb_008406_030 Hb_004297_080--Hb_008406_030 Hb_004297_080--Hb_002233_080 Hb_004297_080--Hb_000210_160 Hb_004297_080--Hb_001675_310 Hb_002598_040 Hb_002598_040 Hb_001999_200--Hb_002598_040 Hb_000479_060 Hb_000479_060 Hb_001999_200--Hb_000479_060 Hb_002762_100 Hb_002762_100 Hb_001999_200--Hb_002762_100 Hb_001999_200--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_001999_200--Hb_017700_030 Hb_001999_200--Hb_001675_310 Hb_000403_100--Hb_002598_040 Hb_000403_100--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_000403_100--Hb_002035_130 Hb_005396_030 Hb_005396_030 Hb_000403_100--Hb_005396_030 Hb_114733_010 Hb_114733_010 Hb_000403_100--Hb_114733_010 Hb_007292_050--Hb_114733_010 Hb_005618_010 Hb_005618_010 Hb_007292_050--Hb_005618_010 Hb_000172_070 Hb_000172_070 Hb_007292_050--Hb_000172_070 Hb_173107_020 Hb_173107_020 Hb_007292_050--Hb_173107_020 Hb_010174_200 Hb_010174_200 Hb_007292_050--Hb_010174_200 Hb_002250_140 Hb_002250_140 Hb_007292_050--Hb_002250_140 Hb_178658_010 Hb_178658_010 Hb_002311_110--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_002311_110--Hb_000836_210 Hb_002004_010 Hb_002004_010 Hb_002311_110--Hb_002004_010 Hb_002849_110 Hb_002849_110 Hb_002311_110--Hb_002849_110 Hb_005656_160 Hb_005656_160 Hb_002311_110--Hb_005656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50288 16.9097 6.98961 20.2818 0.333621 1.45222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0275212 0.140773 0 2.03952 5.24926

CAGE analysis