Hb_002311_110

Information

Type -
Description -
Location Contig2311: 54676-54915
Sequence    

Annotation

kegg
ID rcu:RCOM_0999620
description hypothetical protein
nr
ID XP_002519183.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0999620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24302: 54609-55088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_178658_010 0.1181366663 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
3 Hb_000836_210 0.1270478315 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
4 Hb_002004_010 0.1281316956 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
5 Hb_002849_110 0.1319834408 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
6 Hb_000666_120 0.1464303091 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_005656_160 0.1498998306 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
8 Hb_001541_160 0.1533654565 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
9 Hb_001699_030 0.1533705449 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
10 Hb_001472_140 0.1538364617 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
11 Hb_005000_050 0.1565731307 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
12 Hb_004297_080 0.1574416336 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_050847_030 0.160904622 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
14 Hb_004282_040 0.1634400528 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
15 Hb_000336_190 0.1662226113 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
16 Hb_004013_020 0.1667716544 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
17 Hb_000521_100 0.1712529558 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001405_060 0.1718853378 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
19 Hb_000892_030 0.1733566244 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_000320_270 0.1742007908 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002311_110 Hb_002311_110 Hb_178658_010 Hb_178658_010 Hb_002311_110--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_002311_110--Hb_000836_210 Hb_002004_010 Hb_002004_010 Hb_002311_110--Hb_002004_010 Hb_002849_110 Hb_002849_110 Hb_002311_110--Hb_002849_110 Hb_000666_120 Hb_000666_120 Hb_002311_110--Hb_000666_120 Hb_005656_160 Hb_005656_160 Hb_002311_110--Hb_005656_160 Hb_000336_190 Hb_000336_190 Hb_178658_010--Hb_000336_190 Hb_178658_010--Hb_000836_210 Hb_178658_010--Hb_002849_110 Hb_007382_100 Hb_007382_100 Hb_178658_010--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_178658_010--Hb_000087_100 Hb_000836_210--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_000836_210--Hb_000087_100 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002004_010--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_001675_310 Hb_001675_310 Hb_000666_120--Hb_001675_310 Hb_004297_080 Hb_004297_080 Hb_000666_120--Hb_004297_080 Hb_001999_200 Hb_001999_200 Hb_000666_120--Hb_001999_200 Hb_000403_100 Hb_000403_100 Hb_000666_120--Hb_000403_100 Hb_007292_050 Hb_007292_050 Hb_000666_120--Hb_007292_050 Hb_005656_160--Hb_004297_080 Hb_001699_030 Hb_001699_030 Hb_005656_160--Hb_001699_030 Hb_005656_160--Hb_000666_120 Hb_000732_240 Hb_000732_240 Hb_005656_160--Hb_000732_240 Hb_049915_010 Hb_049915_010 Hb_005656_160--Hb_049915_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63804 25.3535 7.45752 20.3384 1.60942 1.3753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.71558 1.70779 0 2.40903 7.4971

CAGE analysis