Hb_013405_100

Information

Type transcription factor
Description TF Family: GRAS
Location Contig13405: 53108-55015
Sequence    

Annotation

kegg
ID rcu:RCOM_1582830
description DELLA protein GAI, putative
nr
ID XP_012090206.1
description PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
swissprot
ID Q9FYR7
description Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1
trembl
ID A0A067JEL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26073 PE=4 SV=1
Gene Ontology
ID GO:0005737
description scarecrow-like protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 050_M03.ab1: 54393-55118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_100 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
2 Hb_065525_010 0.1146060648 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
3 Hb_002004_010 0.1229287283 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
4 Hb_097634_010 0.1384901365 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
5 Hb_001318_140 0.1390875384 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
6 Hb_001619_160 0.1397776357 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
7 Hb_005271_180 0.1470433411 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
8 Hb_002973_030 0.1495841753 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000087_100 0.1524076811 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
10 Hb_006052_060 0.1543329511 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_001754_200 0.1550946804 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
12 Hb_007382_100 0.1595394998 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_000116_290 0.1595577091 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
14 Hb_002571_070 0.160224329 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
15 Hb_001242_190 0.1611868247 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
16 Hb_009476_110 0.1614680928 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
17 Hb_000847_010 0.1625510263 - - PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
18 Hb_028285_020 0.1640594948 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
19 Hb_001213_030 0.1641663282 - - PAR1 protein [Theobroma cacao]
20 Hb_001951_230 0.1651043279 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013405_100 Hb_013405_100 Hb_065525_010 Hb_065525_010 Hb_013405_100--Hb_065525_010 Hb_002004_010 Hb_002004_010 Hb_013405_100--Hb_002004_010 Hb_097634_010 Hb_097634_010 Hb_013405_100--Hb_097634_010 Hb_001318_140 Hb_001318_140 Hb_013405_100--Hb_001318_140 Hb_001619_160 Hb_001619_160 Hb_013405_100--Hb_001619_160 Hb_005271_180 Hb_005271_180 Hb_013405_100--Hb_005271_180 Hb_065525_010--Hb_001318_140 Hb_001242_190 Hb_001242_190 Hb_065525_010--Hb_001242_190 Hb_065525_010--Hb_001619_160 Hb_006052_060 Hb_006052_060 Hb_065525_010--Hb_006052_060 Hb_149484_010 Hb_149484_010 Hb_065525_010--Hb_149484_010 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002849_110 Hb_002849_110 Hb_002004_010--Hb_002849_110 Hb_000892_030 Hb_000892_030 Hb_097634_010--Hb_000892_030 Hb_010417_110 Hb_010417_110 Hb_097634_010--Hb_010417_110 Hb_010174_200 Hb_010174_200 Hb_097634_010--Hb_010174_200 Hb_000567_110 Hb_000567_110 Hb_097634_010--Hb_000567_110 Hb_004109_110 Hb_004109_110 Hb_097634_010--Hb_004109_110 Hb_000638_180 Hb_000638_180 Hb_097634_010--Hb_000638_180 Hb_007382_100 Hb_007382_100 Hb_001318_140--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_001318_140--Hb_000087_100 Hb_001318_140--Hb_006052_060 Hb_001318_140--Hb_001619_160 Hb_001318_140--Hb_149484_010 Hb_001619_160--Hb_006052_060 Hb_001619_160--Hb_001242_190 Hb_001049_160 Hb_001049_160 Hb_001619_160--Hb_001049_160 Hb_001619_160--Hb_007382_100 Hb_007007_090 Hb_007007_090 Hb_005271_180--Hb_007007_090 Hb_004143_140 Hb_004143_140 Hb_005271_180--Hb_004143_140 Hb_005074_010 Hb_005074_010 Hb_005271_180--Hb_005074_010 Hb_001046_040 Hb_001046_040 Hb_005271_180--Hb_001046_040 Hb_044624_010 Hb_044624_010 Hb_005271_180--Hb_044624_010 Hb_000363_250 Hb_000363_250 Hb_005271_180--Hb_000363_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23372 86.7552 22.7393 49.9962 0.474631 0.633195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47216 6.00654 3.86268 12.9295 39.7652

CAGE analysis