Hb_007382_100

Information

Type -
Description -
Location Contig7382: 53954-59115
Sequence    

Annotation

kegg
ID rcu:RCOM_1078760
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002514864.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID B9RM95
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1078760 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56258: 54159-59123
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_100 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_001318_140 0.0656723794 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
3 Hb_000087_100 0.11460445 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
4 Hb_001329_080 0.1195549638 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
5 Hb_001619_160 0.1255602453 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
6 Hb_001898_130 0.1265177262 - - ATP binding protein, putative [Ricinus communis]
7 Hb_003430_070 0.1277243736 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
8 Hb_001049_160 0.1298877143 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_001226_170 0.1299790691 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_178658_010 0.1300630647 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
11 Hb_009476_110 0.1304827888 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
12 Hb_000776_050 0.1317891949 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_006052_060 0.1325155864 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_000056_080 0.1331887539 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
15 Hb_000069_330 0.1333847108 - - protein with unknown function [Ricinus communis]
16 Hb_014720_050 0.1334460009 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
17 Hb_000038_040 0.1355813636 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
18 Hb_000009_200 0.1361900553 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
19 Hb_001102_200 0.1364044703 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
20 Hb_005714_100 0.1370656418 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

Gene co-expression network

sample Hb_007382_100 Hb_007382_100 Hb_001318_140 Hb_001318_140 Hb_007382_100--Hb_001318_140 Hb_000087_100 Hb_000087_100 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_001619_160 Hb_001619_160 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_001318_140--Hb_000087_100 Hb_006052_060 Hb_006052_060 Hb_001318_140--Hb_006052_060 Hb_001318_140--Hb_001619_160 Hb_065525_010 Hb_065525_010 Hb_001318_140--Hb_065525_010 Hb_149484_010 Hb_149484_010 Hb_001318_140--Hb_149484_010 Hb_001226_170 Hb_001226_170 Hb_000087_100--Hb_001226_170 Hb_002849_110 Hb_002849_110 Hb_000087_100--Hb_002849_110 Hb_000836_210 Hb_000836_210 Hb_000087_100--Hb_000836_210 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_001472_140 Hb_001472_140 Hb_001329_080--Hb_001472_140 Hb_000009_200 Hb_000009_200 Hb_001329_080--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_001329_080--Hb_005714_100 Hb_182970_010 Hb_182970_010 Hb_001329_080--Hb_182970_010 Hb_056196_060 Hb_056196_060 Hb_001329_080--Hb_056196_060 Hb_001619_160--Hb_006052_060 Hb_001242_190 Hb_001242_190 Hb_001619_160--Hb_001242_190 Hb_001619_160--Hb_065525_010 Hb_001049_160 Hb_001049_160 Hb_001619_160--Hb_001049_160 Hb_018790_050 Hb_018790_050 Hb_001898_130--Hb_018790_050 Hb_000069_330 Hb_000069_330 Hb_001898_130--Hb_000069_330 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_001898_130--Hb_000009_200 Hb_001474_050 Hb_001474_050 Hb_001898_130--Hb_001474_050 Hb_048476_040 Hb_048476_040 Hb_001898_130--Hb_048476_040 Hb_000009_150 Hb_000009_150 Hb_003430_070--Hb_000009_150 Hb_003430_070--Hb_006052_060 Hb_003430_070--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003430_070--Hb_001357_060 Hb_132840_020 Hb_132840_020 Hb_003430_070--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_003430_070--Hb_000329_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1629 45.0272 20.7631 26.3417 0.786536 2.12385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62196 5.83364 3.75876 10.0489 12.7291

CAGE analysis