Hb_001226_170

Information

Type -
Description -
Location Contig1226: 240703-242187
Sequence    

Annotation

kegg
ID rcu:RCOM_0706300
description hypothetical protein
nr
ID XP_012077244.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q96MB7
description Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
trembl
ID A0A067KQG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_170 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000087_100 0.1111839449 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
3 Hb_003633_150 0.1232994224 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
4 Hb_009476_110 0.1262331234 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
5 Hb_001102_200 0.1285245485 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
6 Hb_007382_100 0.1299790691 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_182970_010 0.1315670701 - - calmodulin-binding protein 60-D [Populus trichocarpa]
8 Hb_001318_140 0.1369895591 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
9 Hb_014720_050 0.1370077137 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
10 Hb_001329_080 0.1389493011 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
11 Hb_005080_020 0.1407277898 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_000776_050 0.1580549525 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_001474_050 0.1581528257 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
14 Hb_001898_130 0.1589811449 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000836_210 0.1605269183 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
16 Hb_001619_160 0.1616053675 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
17 Hb_048476_040 0.1632150917 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
18 Hb_002849_110 0.1632250244 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
19 Hb_001472_140 0.1641634456 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
20 Hb_000069_330 0.1659799596 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001226_170 Hb_001226_170 Hb_000087_100 Hb_000087_100 Hb_001226_170--Hb_000087_100 Hb_003633_150 Hb_003633_150 Hb_001226_170--Hb_003633_150 Hb_009476_110 Hb_009476_110 Hb_001226_170--Hb_009476_110 Hb_001102_200 Hb_001102_200 Hb_001226_170--Hb_001102_200 Hb_007382_100 Hb_007382_100 Hb_001226_170--Hb_007382_100 Hb_182970_010 Hb_182970_010 Hb_001226_170--Hb_182970_010 Hb_001318_140 Hb_001318_140 Hb_000087_100--Hb_001318_140 Hb_002849_110 Hb_002849_110 Hb_000087_100--Hb_002849_110 Hb_000087_100--Hb_007382_100 Hb_000836_210 Hb_000836_210 Hb_000087_100--Hb_000836_210 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_003633_150--Hb_009476_110 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_003633_150--Hb_182970_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_000776_050 Hb_000776_050 Hb_009476_110--Hb_000776_050 Hb_031108_010 Hb_031108_010 Hb_009476_110--Hb_031108_010 Hb_001898_010 Hb_001898_010 Hb_009476_110--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_009476_110--Hb_005375_070 Hb_003905_040 Hb_003905_040 Hb_009476_110--Hb_003905_040 Hb_000110_260 Hb_000110_260 Hb_001102_200--Hb_000110_260 Hb_000320_270 Hb_000320_270 Hb_001102_200--Hb_000320_270 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_005725_280 Hb_005725_280 Hb_001102_200--Hb_005725_280 Hb_089305_010 Hb_089305_010 Hb_001102_200--Hb_089305_010 Hb_007382_100--Hb_001318_140 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_001619_160 Hb_001619_160 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_002400_040 Hb_002400_040 Hb_182970_010--Hb_002400_040 Hb_182970_010--Hb_001329_080 Hb_003209_090 Hb_003209_090 Hb_182970_010--Hb_003209_090 Hb_005408_080 Hb_005408_080 Hb_182970_010--Hb_005408_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56621 60.9894 29.7283 38.8702 0.241016 0.671443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6222 2.56004 9.98929 9.28736 14.865

CAGE analysis