Hb_000836_210

Information

Type -
Description -
Location Contig836: 183826-185265
Sequence    

Annotation

kegg
ID rcu:RCOM_1616250
description ATP binding protein, putative
nr
ID KDP28591.1
description hypothetical protein JCGZ_14362 [Jatropha curcas]
swissprot
ID Q9FLW0
description Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1
trembl
ID A0A067JX97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14362 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59928: 183430-185395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_210 0.0 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
2 Hb_002849_110 0.0812270331 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
3 Hb_001472_140 0.1060329637 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
4 Hb_000087_100 0.1166239299 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
5 Hb_178658_010 0.1220426552 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
6 Hb_001541_160 0.1246047014 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
7 Hb_002311_110 0.1270478315 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000336_190 0.1278271975 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
9 Hb_000320_270 0.1295116223 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
10 Hb_001329_080 0.1357567453 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
11 Hb_001405_060 0.1440354015 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
12 Hb_002004_010 0.1452952538 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
13 Hb_001102_200 0.1466906264 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
14 Hb_001318_140 0.1474668806 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
15 Hb_005000_050 0.1485006106 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
16 Hb_000009_200 0.1490105541 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
17 Hb_000200_170 0.1501474057 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
18 Hb_004282_040 0.150499643 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_004297_080 0.1516236799 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_004013_020 0.1520738098 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_210 Hb_000836_210 Hb_002849_110 Hb_002849_110 Hb_000836_210--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_000087_100 Hb_000087_100 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002311_110 Hb_002311_110 Hb_000836_210--Hb_002311_110 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_004297_080 Hb_004297_080 Hb_001472_140--Hb_004297_080 Hb_008406_030 Hb_008406_030 Hb_001472_140--Hb_008406_030 Hb_002875_070 Hb_002875_070 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_001318_140 Hb_001318_140 Hb_000087_100--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_000087_100--Hb_001226_170 Hb_007382_100 Hb_007382_100 Hb_000087_100--Hb_007382_100 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_178658_010--Hb_002311_110 Hb_000336_190 Hb_000336_190 Hb_178658_010--Hb_000336_190 Hb_178658_010--Hb_002849_110 Hb_178658_010--Hb_007382_100 Hb_178658_010--Hb_000087_100 Hb_002004_010 Hb_002004_010 Hb_001541_160--Hb_002004_010 Hb_001541_160--Hb_002849_110 Hb_000975_370 Hb_000975_370 Hb_001541_160--Hb_000975_370 Hb_004013_020 Hb_004013_020 Hb_001541_160--Hb_004013_020 Hb_050847_030 Hb_050847_030 Hb_001541_160--Hb_050847_030 Hb_002311_110--Hb_002004_010 Hb_002311_110--Hb_002849_110 Hb_000666_120 Hb_000666_120 Hb_002311_110--Hb_000666_120 Hb_005656_160 Hb_005656_160 Hb_002311_110--Hb_005656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6706 220.921 81.5728 169.054 9.17085 19.234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59488 5.74317 12.9952 23.7194 58.6791

CAGE analysis