Hb_002849_110

Information

Type -
Description -
Location Contig2849: 79376-89325
Sequence    

Annotation

kegg
ID rcu:RCOM_1616250
description ATP binding protein, putative
nr
ID KDP28591.1
description hypothetical protein JCGZ_14362 [Jatropha curcas]
swissprot
ID Q9FLW0
description Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1
trembl
ID A0A067JX97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14362 PE=4 SV=1
Gene Ontology
ID GO:0016757
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29830: 87790-89786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_110 0.0 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
2 Hb_000836_210 0.0812270331 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
3 Hb_001405_060 0.0948296412 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
4 Hb_005282_010 0.1070840168 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
5 Hb_000373_250 0.11055468 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
6 Hb_000087_100 0.1140533892 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
7 Hb_004282_040 0.1221898595 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_098160_010 0.1239506268 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_002234_200 0.124239124 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
10 Hb_005694_150 0.1254165547 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
11 Hb_178658_010 0.1268822162 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
12 Hb_002004_010 0.1284954947 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
13 Hb_001541_160 0.1296610249 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
14 Hb_002311_110 0.1319834408 - - conserved hypothetical protein [Ricinus communis]
15 Hb_050847_030 0.1322813589 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
16 Hb_005000_050 0.1343146971 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
17 Hb_003633_150 0.1343623606 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
18 Hb_000172_080 0.1346909931 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
19 Hb_000365_340 0.1362624808 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
20 Hb_000336_190 0.1393625353 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]

Gene co-expression network

sample Hb_002849_110 Hb_002849_110 Hb_000836_210 Hb_000836_210 Hb_002849_110--Hb_000836_210 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_000087_100 Hb_000087_100 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002311_110 Hb_002311_110 Hb_000836_210--Hb_002311_110 Hb_001405_060--Hb_005282_010 Hb_002234_200 Hb_002234_200 Hb_001405_060--Hb_002234_200 Hb_098160_010 Hb_098160_010 Hb_001405_060--Hb_098160_010 Hb_001405_060--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_001405_060--Hb_003633_150 Hb_005282_010--Hb_002234_200 Hb_005282_010--Hb_000373_250 Hb_005282_010--Hb_003633_150 Hb_005282_010--Hb_098160_010 Hb_007120_010 Hb_007120_010 Hb_000373_250--Hb_007120_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_001318_140 Hb_001318_140 Hb_000087_100--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_000087_100--Hb_001226_170 Hb_007382_100 Hb_007382_100 Hb_000087_100--Hb_007382_100 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_000116_290 Hb_000116_290 Hb_004282_040--Hb_000116_290 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_009476_160 Hb_009476_160 Hb_004282_040--Hb_009476_160 Hb_000976_340 Hb_000976_340 Hb_004282_040--Hb_000976_340 Hb_000692_230 Hb_000692_230 Hb_004282_040--Hb_000692_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7608 168.083 53.9208 94.1136 5.94076 6.70542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95353 2.71341 5.46393 12.8507 38.4846

CAGE analysis