Hb_001541_160

Information

Type -
Description -
Location Contig1541: 147694-148131
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013029mg
description hypothetical protein
nr
ID XP_012085531.1
description PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
swissprot
ID Q9SI09
description Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1
trembl
ID A0A067JRV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase xerico

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 011_B14.ab1: 147530-148281

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_160 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
2 Hb_002004_010 0.1242583976 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
3 Hb_000836_210 0.1246047014 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
4 Hb_002849_110 0.1296610249 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
5 Hb_000975_370 0.1310698899 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
6 Hb_004013_020 0.1337613704 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
7 Hb_050847_030 0.1498231095 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
8 Hb_178658_010 0.1516393581 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
9 Hb_000087_100 0.1525703301 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
10 Hb_002311_110 0.1533654565 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000345_110 0.1575222646 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
12 Hb_000753_120 0.1582667525 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
13 Hb_002973_030 0.1703527267 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_013405_100 0.1726140353 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
15 Hb_001699_030 0.1734036361 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
16 Hb_009421_050 0.1736897769 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
17 Hb_000371_120 0.1758826699 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
18 Hb_000172_080 0.1788440321 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
19 Hb_000567_240 0.1796994261 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
20 Hb_013691_060 0.1797487322 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]

Gene co-expression network

sample Hb_001541_160 Hb_001541_160 Hb_002004_010 Hb_002004_010 Hb_001541_160--Hb_002004_010 Hb_000836_210 Hb_000836_210 Hb_001541_160--Hb_000836_210 Hb_002849_110 Hb_002849_110 Hb_001541_160--Hb_002849_110 Hb_000975_370 Hb_000975_370 Hb_001541_160--Hb_000975_370 Hb_004013_020 Hb_004013_020 Hb_001541_160--Hb_004013_020 Hb_050847_030 Hb_050847_030 Hb_001541_160--Hb_050847_030 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002004_010--Hb_002849_110 Hb_000836_210--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_000087_100 Hb_000087_100 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_000836_210--Hb_002311_110 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_000975_370--Hb_004013_020 Hb_000753_120 Hb_000753_120 Hb_000975_370--Hb_000753_120 Hb_000065_090 Hb_000065_090 Hb_000975_370--Hb_000065_090 Hb_000975_370--Hb_002973_030 Hb_000975_370--Hb_002004_010 Hb_004013_020--Hb_000753_120 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_004013_020--Hb_000065_090 Hb_005694_150 Hb_005694_150 Hb_050847_030--Hb_005694_150 Hb_000375_150 Hb_000375_150 Hb_050847_030--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_050847_030--Hb_000325_070 Hb_000892_030 Hb_000892_030 Hb_050847_030--Hb_000892_030 Hb_000365_340 Hb_000365_340 Hb_050847_030--Hb_000365_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61088 124.558 27.8416 72.5793 2.45731 9.70477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7154 4.36515 5.43215 4.29906 47.3519

CAGE analysis