Hb_000065_090

Information

Type -
Description -
Location Contig65: 223748-225088
Sequence    

Annotation

kegg
ID rcu:RCOM_0639540
description potassium channel tetramerization domain-containing protein, putative
nr
ID XP_002532959.1
description potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZUH1
description BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1
trembl
ID B9T3Z0
description Potassium channel tetramerization domain-containing protein, putative OS=Ricinus communis GN=RCOM_0639540 PE=4 SV=1
Gene Ontology
ID GO:0051260
description btb poz domain-containing protein at2g24240

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000065_090 0.0 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
2 Hb_004013_020 0.1321607204 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
3 Hb_004116_180 0.1362333738 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
4 Hb_000307_010 0.1462937191 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
5 Hb_033152_100 0.1467004819 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000221_090 0.1490242152 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
7 Hb_001133_010 0.1589738284 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000975_370 0.1595162595 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
9 Hb_000258_370 0.165746645 - - hypothetical protein [Ricinus communis]
10 Hb_138585_100 0.1665393612 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
11 Hb_000579_030 0.1704119498 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
12 Hb_000836_600 0.1728375317 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
13 Hb_000567_240 0.1754132349 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
14 Hb_000413_020 0.1812653061 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
15 Hb_001246_120 0.1813120746 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
16 Hb_000853_220 0.1813510299 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
17 Hb_031089_050 0.1816073572 - - kinase, putative [Ricinus communis]
18 Hb_023344_110 0.1829250108 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
19 Hb_007897_030 0.1835022775 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
20 Hb_143766_030 0.1840979251 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000065_090 Hb_000065_090 Hb_004013_020 Hb_004013_020 Hb_000065_090--Hb_004013_020 Hb_004116_180 Hb_004116_180 Hb_000065_090--Hb_004116_180 Hb_000307_010 Hb_000307_010 Hb_000065_090--Hb_000307_010 Hb_033152_100 Hb_033152_100 Hb_000065_090--Hb_033152_100 Hb_000221_090 Hb_000221_090 Hb_000065_090--Hb_000221_090 Hb_001133_010 Hb_001133_010 Hb_000065_090--Hb_001133_010 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_001541_160 Hb_001541_160 Hb_004013_020--Hb_001541_160 Hb_000579_030 Hb_000579_030 Hb_004116_180--Hb_000579_030 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_004116_180--Hb_033152_100 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000920_290 Hb_000920_290 Hb_004116_180--Hb_000920_290 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080 Hb_000307_010--Hb_004116_180 Hb_000307_010--Hb_004013_020 Hb_002368_030 Hb_002368_030 Hb_000307_010--Hb_002368_030 Hb_000567_240 Hb_000567_240 Hb_000307_010--Hb_000567_240 Hb_004994_300 Hb_004994_300 Hb_000307_010--Hb_004994_300 Hb_000614_150 Hb_000614_150 Hb_033152_100--Hb_000614_150 Hb_000367_020 Hb_000367_020 Hb_033152_100--Hb_000367_020 Hb_010180_060 Hb_010180_060 Hb_033152_100--Hb_010180_060 Hb_001951_100 Hb_001951_100 Hb_033152_100--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_033152_100--Hb_008686_020 Hb_000370_070 Hb_000370_070 Hb_000221_090--Hb_000370_070 Hb_000221_090--Hb_004013_020 Hb_000797_060 Hb_000797_060 Hb_000221_090--Hb_000797_060 Hb_002289_150 Hb_002289_150 Hb_000221_090--Hb_002289_150 Hb_000221_090--Hb_000579_030 Hb_001133_010--Hb_000836_600 Hb_006054_030 Hb_006054_030 Hb_001133_010--Hb_006054_030 Hb_000200_170 Hb_000200_170 Hb_001133_010--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_001133_010--Hb_143766_030 Hb_002875_070 Hb_002875_070 Hb_001133_010--Hb_002875_070 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2646 63.5964 10.7218 51.0503 9.39235 8.39782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71863 7.30325 8.63445 5.78408 40.9464

CAGE analysis