Hb_004116_180

Information

Type -
Description -
Location Contig4116: 193080-198280
Sequence    

Annotation

kegg
ID rcu:RCOM_0178710
description hypothetical protein
nr
ID XP_012087333.1
description PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
swissprot
ID P74459
description Chaperone protein ClpB 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpB1 PE=3 SV=1
trembl
ID A0A067LC34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01258 PE=4 SV=1
Gene Ontology
ID GO:0005524
description double clp-n motif-containing p-loop nucleoside triphosphate hydrolases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40728: 192726-192910 , PASA_asmbl_40729: 192981-193777 , PASA_asmbl_40731: 194166-197440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_180 0.0 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
2 Hb_000579_030 0.1061523474 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
3 Hb_001673_060 0.1082347758 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
4 Hb_033152_100 0.1113244072 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001226_110 0.1217717631 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
6 Hb_000920_290 0.1255287324 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_000340_080 0.1285463905 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
8 Hb_001269_050 0.1301451025 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
9 Hb_000853_220 0.1307080002 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
10 Hb_000173_160 0.1332600924 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000856_020 0.1345443188 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
12 Hb_000492_080 0.1348614751 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
13 Hb_000413_020 0.1357292158 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
14 Hb_000065_090 0.1362333738 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
15 Hb_023765_010 0.1366712202 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_005649_080 0.1369491685 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_001103_090 0.1387682244 - - PREDICTED: patellin-3 [Populus euphratica]
18 Hb_000473_120 0.1432136242 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
19 Hb_013405_180 0.1436177321 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_001951_100 0.143737655 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_004116_180 Hb_004116_180 Hb_000579_030 Hb_000579_030 Hb_004116_180--Hb_000579_030 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_033152_100 Hb_033152_100 Hb_004116_180--Hb_033152_100 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000920_290 Hb_000920_290 Hb_004116_180--Hb_000920_290 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080 Hb_001269_050 Hb_001269_050 Hb_000579_030--Hb_001269_050 Hb_000473_120 Hb_000473_120 Hb_000579_030--Hb_000473_120 Hb_000492_080 Hb_000492_080 Hb_000579_030--Hb_000492_080 Hb_023765_010 Hb_023765_010 Hb_000579_030--Hb_023765_010 Hb_001446_060 Hb_001446_060 Hb_000579_030--Hb_001446_060 Hb_001673_060--Hb_000340_080 Hb_022425_060 Hb_022425_060 Hb_001673_060--Hb_022425_060 Hb_005649_080 Hb_005649_080 Hb_001673_060--Hb_005649_080 Hb_000656_150 Hb_000656_150 Hb_001673_060--Hb_000656_150 Hb_010661_010 Hb_010661_010 Hb_001673_060--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_001673_060--Hb_004128_030 Hb_000614_150 Hb_000614_150 Hb_033152_100--Hb_000614_150 Hb_000367_020 Hb_000367_020 Hb_033152_100--Hb_000367_020 Hb_010180_060 Hb_010180_060 Hb_033152_100--Hb_010180_060 Hb_001951_100 Hb_001951_100 Hb_033152_100--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_033152_100--Hb_008686_020 Hb_001226_110--Hb_005649_080 Hb_001103_090 Hb_001103_090 Hb_001226_110--Hb_001103_090 Hb_009476_120 Hb_009476_120 Hb_001226_110--Hb_009476_120 Hb_000358_220 Hb_000358_220 Hb_001226_110--Hb_000358_220 Hb_170077_010 Hb_170077_010 Hb_001226_110--Hb_170077_010 Hb_000358_100 Hb_000358_100 Hb_001226_110--Hb_000358_100 Hb_000920_290--Hb_000473_120 Hb_002909_100 Hb_002909_100 Hb_000920_290--Hb_002909_100 Hb_000470_110 Hb_000470_110 Hb_000920_290--Hb_000470_110 Hb_143766_030 Hb_143766_030 Hb_000920_290--Hb_143766_030 Hb_000200_170 Hb_000200_170 Hb_000920_290--Hb_000200_170 Hb_000340_080--Hb_022425_060 Hb_002817_060 Hb_002817_060 Hb_000340_080--Hb_002817_060 Hb_001828_170 Hb_001828_170 Hb_000340_080--Hb_001828_170 Hb_000347_300 Hb_000347_300 Hb_000340_080--Hb_000347_300 Hb_000340_080--Hb_005649_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.2487 16.5002 4.7165 15.5738 4.00447 6.46007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81435 1.38656 2.55301 4.45409 12.5485

CAGE analysis