Hb_000340_080

Information

Type -
Description -
Location Contig340: 93349-96000
Sequence    

Annotation

kegg
ID rcu:RCOM_0176490
description isoamylase, putative (EC:3.2.1.68)
nr
ID XP_012092290.1
description PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q8L735
description Isoamylase 2, chloroplastic OS=Arabidopsis thaliana GN=ISA2 PE=1 SV=2
trembl
ID A0A067JCG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21968 PE=4 SV=1
Gene Ontology
ID GO:0019156
description isoamylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35512: 92752-93508 , PASA_asmbl_35514: 94588-94837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_080 0.0 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
2 Hb_001673_060 0.0546698737 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
3 Hb_022425_060 0.0847751259 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
4 Hb_002817_060 0.0884112905 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
5 Hb_001828_170 0.0894178891 - - PREDICTED: protein TPLATE [Jatropha curcas]
6 Hb_000347_300 0.091809804 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
7 Hb_005649_080 0.099563704 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_003599_030 0.1000292859 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
9 Hb_020805_150 0.1015095984 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000212_420 0.1044465396 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
11 Hb_000656_150 0.1044703391 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
12 Hb_004128_030 0.1049636747 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
13 Hb_002686_140 0.1064631169 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
14 Hb_000809_250 0.1071621709 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
15 Hb_001226_110 0.1080067605 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
16 Hb_009615_160 0.1114661205 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_001103_090 0.11168665 - - PREDICTED: patellin-3 [Populus euphratica]
18 Hb_002928_190 0.1118140523 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
19 Hb_001329_250 0.1122893156 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
20 Hb_022425_030 0.1124776246 - - PREDICTED: casein kinase I [Jatropha curcas]

Gene co-expression network

sample Hb_000340_080 Hb_000340_080 Hb_001673_060 Hb_001673_060 Hb_000340_080--Hb_001673_060 Hb_022425_060 Hb_022425_060 Hb_000340_080--Hb_022425_060 Hb_002817_060 Hb_002817_060 Hb_000340_080--Hb_002817_060 Hb_001828_170 Hb_001828_170 Hb_000340_080--Hb_001828_170 Hb_000347_300 Hb_000347_300 Hb_000340_080--Hb_000347_300 Hb_005649_080 Hb_005649_080 Hb_000340_080--Hb_005649_080 Hb_001673_060--Hb_022425_060 Hb_001673_060--Hb_005649_080 Hb_000656_150 Hb_000656_150 Hb_001673_060--Hb_000656_150 Hb_010661_010 Hb_010661_010 Hb_001673_060--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_001673_060--Hb_004128_030 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_002817_060--Hb_000347_300 Hb_002817_060--Hb_001828_170 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_001329_250 Hb_001329_250 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180 Hb_001828_170--Hb_000347_300 Hb_001828_170--Hb_001329_250 Hb_022425_030 Hb_022425_030 Hb_001828_170--Hb_022425_030 Hb_003498_080 Hb_003498_080 Hb_001828_170--Hb_003498_080 Hb_000347_300--Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_000347_300--Hb_004044_050 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_002928_190 Hb_002928_190 Hb_005649_080--Hb_002928_190 Hb_001226_110 Hb_001226_110 Hb_005649_080--Hb_001226_110 Hb_170077_010 Hb_170077_010 Hb_005649_080--Hb_170077_010 Hb_005649_080--Hb_020805_150 Hb_000358_220 Hb_000358_220 Hb_005649_080--Hb_000358_220 Hb_003939_060 Hb_003939_060 Hb_005649_080--Hb_003939_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13149 8.26354 3.46419 8.27766 2.68563 2.86303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22098 1.13469 3.46016 3.95008 5.49631

CAGE analysis