Hb_000473_120

Information

Type -
Description -
Location Contig473: 206523-210043
Sequence    

Annotation

kegg
ID pda:103696175
description pullulanase 1, chloroplastic-like
nr
ID KDP30498.1
description hypothetical protein JCGZ_16177 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K624
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16177 PE=4 SV=1
Gene Ontology
ID GO:0043169
description pullulanase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44425: 206303-279082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_120 0.0 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
2 Hb_031089_050 0.0981057753 - - kinase, putative [Ricinus communis]
3 Hb_011828_010 0.1031980324 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
4 Hb_001998_220 0.1087344146 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
5 Hb_020805_120 0.1122347436 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
6 Hb_003006_080 0.1124241782 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_002311_130 0.1144010233 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
8 Hb_010381_020 0.1160782711 - - Endosomal P24A protein precursor, putative [Ricinus communis]
9 Hb_000920_290 0.116218879 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_102763_010 0.1187125891 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
11 Hb_002805_090 0.1195673419 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_007897_030 0.1219296439 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
13 Hb_002909_100 0.1225240401 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
14 Hb_005000_090 0.1271690835 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
15 Hb_004943_040 0.1293195233 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
16 Hb_001446_060 0.1294431465 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_005116_140 0.1314780916 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
18 Hb_000492_080 0.1315611068 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
19 Hb_002289_150 0.1338944699 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
20 Hb_010407_030 0.1342954304 - - PREDICTED: casein kinase I-like [Jatropha curcas]

Gene co-expression network

sample Hb_000473_120 Hb_000473_120 Hb_031089_050 Hb_031089_050 Hb_000473_120--Hb_031089_050 Hb_011828_010 Hb_011828_010 Hb_000473_120--Hb_011828_010 Hb_001998_220 Hb_001998_220 Hb_000473_120--Hb_001998_220 Hb_020805_120 Hb_020805_120 Hb_000473_120--Hb_020805_120 Hb_003006_080 Hb_003006_080 Hb_000473_120--Hb_003006_080 Hb_002311_130 Hb_002311_130 Hb_000473_120--Hb_002311_130 Hb_007897_030 Hb_007897_030 Hb_031089_050--Hb_007897_030 Hb_001699_170 Hb_001699_170 Hb_031089_050--Hb_001699_170 Hb_031089_050--Hb_020805_120 Hb_003581_130 Hb_003581_130 Hb_031089_050--Hb_003581_130 Hb_004943_040 Hb_004943_040 Hb_031089_050--Hb_004943_040 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_021977_010 Hb_021977_010 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_005000_090 Hb_005000_090 Hb_001998_220--Hb_005000_090 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_020805_120--Hb_003006_080 Hb_020805_120--Hb_000138_060 Hb_000109_190 Hb_000109_190 Hb_020805_120--Hb_000109_190 Hb_020805_120--Hb_002289_150 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_019654_110 Hb_019654_110 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020 Hb_002311_130--Hb_002805_090 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_002311_130--Hb_005000_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.118 9.34626 4.57697 13.2204 2.14892 3.43135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2233 1.34635 1.37187 4.30519 10.7702

CAGE analysis