Hb_007897_030

Information

Type -
Description -
Location Contig7897: 73639-75900
Sequence    

Annotation

kegg
ID rcu:RCOM_0226910
description ATP binding protein, putative
nr
ID XP_012086367.1
description PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
swissprot
ID O80963
description Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1
trembl
ID B9SU97
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0226910 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein ccr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58293: 73953-74265 , PASA_asmbl_58296: 74894-75313 , PASA_asmbl_58297: 75565-75922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007897_030 0.0 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
2 Hb_031089_050 0.0833045228 - - kinase, putative [Ricinus communis]
3 Hb_002311_130 0.1040970922 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
4 Hb_002400_060 0.1083731808 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
5 Hb_005192_010 0.1132900479 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_001998_150 0.1194918399 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
7 Hb_002805_090 0.12090159 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000473_120 0.1219296439 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
9 Hb_003682_070 0.1231557844 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
10 Hb_007313_040 0.1242221045 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
11 Hb_000369_080 0.1269502742 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
12 Hb_000025_500 0.1282345013 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_003581_130 0.1287579197 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_001221_300 0.1319198136 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
15 Hb_000300_510 0.1322158309 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
16 Hb_004943_040 0.1329627947 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
17 Hb_003687_130 0.1351821584 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
18 Hb_000340_360 0.1358547356 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
19 Hb_000492_080 0.1370742865 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
20 Hb_009674_050 0.1371557697 - - Endosomal P24A protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007897_030 Hb_007897_030 Hb_031089_050 Hb_031089_050 Hb_007897_030--Hb_031089_050 Hb_002311_130 Hb_002311_130 Hb_007897_030--Hb_002311_130 Hb_002400_060 Hb_002400_060 Hb_007897_030--Hb_002400_060 Hb_005192_010 Hb_005192_010 Hb_007897_030--Hb_005192_010 Hb_001998_150 Hb_001998_150 Hb_007897_030--Hb_001998_150 Hb_002805_090 Hb_002805_090 Hb_007897_030--Hb_002805_090 Hb_001699_170 Hb_001699_170 Hb_031089_050--Hb_001699_170 Hb_000473_120 Hb_000473_120 Hb_031089_050--Hb_000473_120 Hb_020805_120 Hb_020805_120 Hb_031089_050--Hb_020805_120 Hb_003581_130 Hb_003581_130 Hb_031089_050--Hb_003581_130 Hb_004943_040 Hb_004943_040 Hb_031089_050--Hb_004943_040 Hb_002311_130--Hb_002805_090 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_001998_220 Hb_001998_220 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_001801_020 Hb_001801_020 Hb_002400_060--Hb_001801_020 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_009674_050 Hb_009674_050 Hb_002400_060--Hb_009674_050 Hb_033642_060 Hb_033642_060 Hb_002400_060--Hb_033642_060 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_000809_250 Hb_000809_250 Hb_001998_150--Hb_000809_250 Hb_000844_050 Hb_000844_050 Hb_001998_150--Hb_000844_050 Hb_000167_120 Hb_000167_120 Hb_001998_150--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001998_150--Hb_000025_500 Hb_001998_150--Hb_007313_040 Hb_048476_080 Hb_048476_080 Hb_001998_150--Hb_048476_080 Hb_005116_140 Hb_005116_140 Hb_002805_090--Hb_005116_140 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_002805_090--Hb_001998_220 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276152 1.07115 0.525322 1.30433 0.200588 0.309551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118229 0.201565 0.4424 0.412845 1.44665

CAGE analysis