Hb_001801_020

Information

Type -
Description -
Location Contig1801: 96974-102171
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11200g
description POPTRDRAFT_835680; hypothetical protein
nr
ID XP_012082709.1
description PREDICTED: xylosyltransferase 1 [Jatropha curcas]
swissprot
ID Q9EPI1
description Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1
trembl
ID A0A067LAG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09705 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17440: 97203-102138 , PASA_asmbl_17441: 98161-98455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001801_020 0.0 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
2 Hb_033642_060 0.0666847945 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
3 Hb_002400_060 0.0700992791 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
4 Hb_183086_030 0.0798917417 - - GTPase-activating protein GYP7 [Gossypium arboreum]
5 Hb_022250_010 0.0862367267 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
6 Hb_126976_010 0.0980359217 - - -
7 Hb_002817_060 0.0986115055 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
8 Hb_003417_010 0.0998455229 - - PREDICTED: protein TPLATE [Jatropha curcas]
9 Hb_001210_040 0.0999562755 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
10 Hb_000172_350 0.1027482301 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
11 Hb_000265_140 0.1061557944 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
12 Hb_001029_040 0.1075126153 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
13 Hb_008014_040 0.1078154482 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
14 Hb_000562_050 0.1098709728 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
15 Hb_001882_020 0.1110641362 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
16 Hb_007735_060 0.1127872278 - - PPase [Hevea brasiliensis]
17 Hb_009674_050 0.1132735636 - - Endosomal P24A protein precursor, putative [Ricinus communis]
18 Hb_003682_070 0.1133185591 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
19 Hb_003746_010 0.1139438516 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000347_300 0.1153264161 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001801_020 Hb_001801_020 Hb_033642_060 Hb_033642_060 Hb_001801_020--Hb_033642_060 Hb_002400_060 Hb_002400_060 Hb_001801_020--Hb_002400_060 Hb_183086_030 Hb_183086_030 Hb_001801_020--Hb_183086_030 Hb_022250_010 Hb_022250_010 Hb_001801_020--Hb_022250_010 Hb_126976_010 Hb_126976_010 Hb_001801_020--Hb_126976_010 Hb_002817_060 Hb_002817_060 Hb_001801_020--Hb_002817_060 Hb_033642_060--Hb_183086_030 Hb_033642_060--Hb_022250_010 Hb_000359_190 Hb_000359_190 Hb_033642_060--Hb_000359_190 Hb_033642_060--Hb_002400_060 Hb_001246_130 Hb_001246_130 Hb_033642_060--Hb_001246_130 Hb_002311_130 Hb_002311_130 Hb_002400_060--Hb_002311_130 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_009674_050 Hb_009674_050 Hb_002400_060--Hb_009674_050 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_183086_030--Hb_022250_010 Hb_183086_030--Hb_000359_190 Hb_000922_060 Hb_000922_060 Hb_183086_030--Hb_000922_060 Hb_183086_030--Hb_001246_130 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_002874_110 Hb_002874_110 Hb_126976_010--Hb_002874_110 Hb_000237_040 Hb_000237_040 Hb_126976_010--Hb_000237_040 Hb_000890_070 Hb_000890_070 Hb_126976_010--Hb_000890_070 Hb_000809_230 Hb_000809_230 Hb_126976_010--Hb_000809_230 Hb_000976_100 Hb_000976_100 Hb_126976_010--Hb_000976_100 Hb_004679_030 Hb_004679_030 Hb_126976_010--Hb_004679_030 Hb_000347_300 Hb_000347_300 Hb_002817_060--Hb_000347_300 Hb_001828_170 Hb_001828_170 Hb_002817_060--Hb_001828_170 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_001329_250 Hb_001329_250 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5572 26.6044 17.5169 47.653 15.686 19.7078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12575 6.30768 17.0336 23.2307 49.5415

CAGE analysis