Hb_001473_170

Information

Type -
Description -
Location Contig1473: 160138-188583
Sequence    

Annotation

kegg
ID rcu:RCOM_1020360
description hypothetical protein
nr
ID XP_012071168.1
description PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
swissprot
ID Q5M868
description Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2
trembl
ID A0A067KWM5
description Non-lysosomal glucosylceramidase OS=Jatropha curcas GN=JCGZ_01145 PE=3 SV=1
Gene Ontology
ID GO:0016021
description non-lysosomal glucosylceramidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11997: 161146-162925 , PASA_asmbl_11998: 163214-163567 , PASA_asmbl_11999: 172695-173015 , PASA_asmbl_12000: 173132-175569 , PASA_asmbl_12002: 175575-180728 , PASA_asmbl_12003: 176074-176260 , PASA_asmbl_12004: 178649-178909 , PASA_asmbl_12006: 180333-180473 , PASA_asmbl_12007: 180740-186222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_170 0.0 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
2 Hb_002311_130 0.091400481 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
3 Hb_010390_010 0.0918553727 - - casein kinase, putative [Ricinus communis]
4 Hb_000258_050 0.0929433569 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
5 Hb_000494_030 0.0941895276 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
6 Hb_004030_060 0.0949595337 - - receptor protein kinase zmpk1, putative [Ricinus communis]
7 Hb_007313_040 0.0958491865 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
8 Hb_002805_090 0.0971600554 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_000157_140 0.0973580635 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_001235_130 0.0984946965 - - -
11 Hb_001951_060 0.0991906976 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
12 Hb_005854_040 0.1002631031 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007317_020 0.1010826101 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
14 Hb_000683_050 0.102468401 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
15 Hb_003517_070 0.1042399987 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
16 Hb_009535_030 0.1045801454 - - CP2 [Hevea brasiliensis]
17 Hb_005694_060 0.1057261702 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
18 Hb_000254_070 0.1059388784 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
19 Hb_098533_010 0.108635362 - - hypothetical protein L484_003492 [Morus notabilis]
20 Hb_000601_040 0.10907535 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]

Gene co-expression network

sample Hb_001473_170 Hb_001473_170 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_010390_010 Hb_010390_010 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_000494_030 Hb_000494_030 Hb_001473_170--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040 Hb_002805_090 Hb_002805_090 Hb_002311_130--Hb_002805_090 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_002311_130--Hb_007313_040 Hb_001998_220 Hb_001998_220 Hb_002311_130--Hb_001998_220 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_010390_010--Hb_000494_030 Hb_010390_010--Hb_004030_060 Hb_000683_050 Hb_000683_050 Hb_010390_010--Hb_000683_050 Hb_005016_010 Hb_005016_010 Hb_010390_010--Hb_005016_010 Hb_007416_070 Hb_007416_070 Hb_010390_010--Hb_007416_070 Hb_000258_050--Hb_005016_010 Hb_001951_060 Hb_001951_060 Hb_000258_050--Hb_001951_060 Hb_000258_050--Hb_007313_040 Hb_007537_030 Hb_007537_030 Hb_000258_050--Hb_007537_030 Hb_034083_020 Hb_034083_020 Hb_000258_050--Hb_034083_020 Hb_000701_030 Hb_000701_030 Hb_000494_030--Hb_000701_030 Hb_000494_030--Hb_000683_050 Hb_000494_030--Hb_004030_060 Hb_021576_070 Hb_021576_070 Hb_000494_030--Hb_021576_070 Hb_000494_030--Hb_007416_070 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_004030_060--Hb_000683_050 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_001998_150 Hb_001998_150 Hb_007313_040--Hb_001998_150 Hb_000167_120 Hb_000167_120 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_000025_500 Hb_000025_500 Hb_007313_040--Hb_000025_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66903 5.40928 5.09147 12.5883 2.24838 2.39583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06762 2.84075 3.03677 10.0538 13.7259

CAGE analysis