Hb_004943_040

Information

Type -
Description -
Location Contig4943: 79299-86479
Sequence    

Annotation

kegg
ID rcu:RCOM_1092950
description Root phototropism protein, putative
nr
ID XP_012075651.1
description PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
swissprot
ID Q9S9Q9
description BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2
trembl
ID A0A067KRP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09248 PE=4 SV=1
Gene Ontology
ID GO:0005886
description btb poz domain-containing protein at1g30440

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45421: 79303-86304
cDNA
(Sanger)
(ID:Location)		 047_K10.ab1: 85694-86304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004943_040 0.0 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
2 Hb_000570_020 0.07124931 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
3 Hb_000283_140 0.0727126501 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
4 Hb_001865_100 0.0790052749 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
5 Hb_000422_080 0.0911023187 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_000157_140 0.1010637348 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_002805_090 0.107520574 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_002026_030 0.108843024 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_031089_050 0.1125040204 - - kinase, putative [Ricinus communis]
10 Hb_000665_200 0.1130204983 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_001250_080 0.1134310947 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
12 Hb_000414_080 0.1146867063 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
13 Hb_000941_120 0.1149859123 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
14 Hb_000197_180 0.1150411038 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
15 Hb_004052_110 0.1153842644 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
16 Hb_000928_120 0.1165915633 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
17 Hb_116349_120 0.1174300038 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_012762_040 0.1176302913 - - big map kinase/bmk, putative [Ricinus communis]
19 Hb_001699_170 0.1177001529 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000638_060 0.1197657769 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]

Gene co-expression network

sample Hb_004943_040 Hb_004943_040 Hb_000570_020 Hb_000570_020 Hb_004943_040--Hb_000570_020 Hb_000283_140 Hb_000283_140 Hb_004943_040--Hb_000283_140 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_004052_110 Hb_004052_110 Hb_001865_100--Hb_004052_110 Hb_003687_130 Hb_003687_130 Hb_001865_100--Hb_003687_130 Hb_000665_200 Hb_000665_200 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_002259_220 Hb_002259_220 Hb_001865_100--Hb_002259_220 Hb_000414_080 Hb_000414_080 Hb_000422_080--Hb_000414_080 Hb_000487_370 Hb_000487_370 Hb_000422_080--Hb_000487_370 Hb_000342_170 Hb_000342_170 Hb_000422_080--Hb_000342_170 Hb_000422_080--Hb_000283_140 Hb_002249_080 Hb_002249_080 Hb_000422_080--Hb_002249_080 Hb_004030_060 Hb_004030_060 Hb_000157_140--Hb_004030_060 Hb_000157_140--Hb_007537_030 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000157_140--Hb_000570_020 Hb_002311_130 Hb_002311_130 Hb_002805_090--Hb_002311_130 Hb_005116_140 Hb_005116_140 Hb_002805_090--Hb_005116_140 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_001998_220 Hb_001998_220 Hb_002805_090--Hb_001998_220 Hb_000025_500 Hb_000025_500 Hb_002805_090--Hb_000025_500 Hb_002805_090--Hb_011174_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0226 14.6947 16.9602 26.3605 2.47746 4.40931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13109 4.16207 5.26765 8.9173 24.4026

CAGE analysis