Hb_000271_220

Information

Type -
Description -
Location Contig271: 353291-359878
Sequence    

Annotation

kegg
ID rcu:RCOM_1247630
description acetylglucosaminyltransferase, putative (EC:2.4.2.26)
nr
ID XP_012074915.1
description PREDICTED: xylosyltransferase 2 [Jatropha curcas]
swissprot
ID Q5QQ51
description Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1
trembl
ID A0A067KHK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09055 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28421: 355542-355694 , PASA_asmbl_28422: 353293-359843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000271_220 0.0 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
2 Hb_000603_020 0.0650155655 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
3 Hb_012807_150 0.0750499481 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
4 Hb_000283_140 0.0941060392 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_000349_200 0.1063428853 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
6 Hb_003006_090 0.1084620029 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
7 Hb_003001_130 0.108667181 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000011_070 0.1172051893 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
9 Hb_000357_070 0.1179610235 - - -
10 Hb_001677_040 0.119623928 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
11 Hb_003680_030 0.1206309169 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
12 Hb_011828_010 0.1217503167 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
13 Hb_000424_030 0.1223416136 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001195_660 0.1259125802 - - metalloendopeptidase, putative [Ricinus communis]
15 Hb_000422_080 0.1291537911 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
16 Hb_006120_060 0.1315726702 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
17 Hb_000327_360 0.1320633876 - - unnamed protein product [Coffea canephora]
18 Hb_006829_070 0.1338177151 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
19 Hb_000388_080 0.134673102 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
20 Hb_000227_280 0.1350691465 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]

Gene co-expression network

sample Hb_000271_220 Hb_000271_220 Hb_000603_020 Hb_000603_020 Hb_000271_220--Hb_000603_020 Hb_012807_150 Hb_012807_150 Hb_000271_220--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_000603_020--Hb_012807_150 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_012807_150--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000011_070 Hb_000011_070 Hb_000349_200--Hb_000011_070 Hb_000349_200--Hb_000603_020 Hb_003929_230 Hb_003929_230 Hb_000349_200--Hb_003929_230 Hb_000349_200--Hb_003006_090 Hb_000056_190 Hb_000056_190 Hb_000349_200--Hb_000056_190 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003462_040 Hb_003462_040 Hb_003006_090--Hb_003462_040 Hb_001195_660 Hb_001195_660 Hb_003006_090--Hb_001195_660 Hb_001677_040 Hb_001677_040 Hb_003006_090--Hb_001677_040 Hb_003006_090--Hb_000603_020 Hb_003001_130--Hb_000928_120 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.66989 3.19926 5.20468 10.1071 0.540862 1.26809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.597861 0.529098 0.493803 1.34071 6.28901

CAGE analysis