Hb_000327_360

Information

Type -
Description -
Location Contig327: 429794-432916
Sequence    

Annotation

kegg
ID rcu:RCOM_0625630
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID CDP19957.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9C8G4
description Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1
trembl
ID A0A068VH79
description Pectate lyase OS=Coffea canephora GN=GSCOC_T00010021001 PE=3 SV=1
Gene Ontology
ID GO:0005886
description probable pectate lyase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34414: 429871-432815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_360 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_012807_150 0.0930095235 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
3 Hb_007101_260 0.0974630584 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
4 Hb_005074_040 0.1033537716 - - ATP binding protein, putative [Ricinus communis]
5 Hb_006120_060 0.1035017463 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
6 Hb_000283_140 0.1084848126 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_000808_150 0.1102601442 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
8 Hb_000749_020 0.1136679584 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
9 Hb_006351_020 0.1148315886 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
10 Hb_014497_010 0.1184334925 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
11 Hb_000689_050 0.1184999968 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000076_030 0.1195149334 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
13 Hb_000139_300 0.120088005 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
14 Hb_000023_110 0.1211107664 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
15 Hb_161396_010 0.1240453285 - - hypothetical protein F383_26394 [Gossypium arboreum]
16 Hb_022693_110 0.1242586282 - - phosphate transporter [Manihot esculenta]
17 Hb_001195_660 0.1245724173 - - metalloendopeptidase, putative [Ricinus communis]
18 Hb_189003_070 0.124970371 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
19 Hb_000941_120 0.1283589701 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
20 Hb_000086_210 0.1313926372 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000327_360 Hb_000327_360 Hb_012807_150 Hb_012807_150 Hb_000327_360--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_000327_360--Hb_007101_260 Hb_005074_040 Hb_005074_040 Hb_000327_360--Hb_005074_040 Hb_006120_060 Hb_006120_060 Hb_000327_360--Hb_006120_060 Hb_000283_140 Hb_000283_140 Hb_000327_360--Hb_000283_140 Hb_000808_150 Hb_000808_150 Hb_000327_360--Hb_000808_150 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_161396_010 Hb_161396_010 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_007101_260--Hb_000283_140 Hb_007101_260--Hb_006120_060 Hb_014497_010 Hb_014497_010 Hb_005074_040--Hb_014497_010 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_000622_330 Hb_000622_330 Hb_006120_060--Hb_000622_330 Hb_006120_060--Hb_000689_050 Hb_006120_060--Hb_000638_060 Hb_006120_060--Hb_000283_140 Hb_010050_020 Hb_010050_020 Hb_006120_060--Hb_010050_020 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000283_140--Hb_000271_220 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000808_150--Hb_161396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466958 1.53676 5.78751 9.97684 0.643373 0.896628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336304 1.02026 0.906681 2.52 6.12535

CAGE analysis