Hb_014497_010

Information

Type -
Description -
Location Contig14497: 12079-17927
Sequence    

Annotation

kegg
ID rcu:RCOM_1602430
description hypothetical protein
nr
ID XP_012073541.1
description PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
swissprot
ID O23144
description Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2
trembl
ID B9R8V2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602430 PE=4 SV=1
Gene Ontology
ID GO:0044464
description myosin heavy fast skeletal muscle

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11691: 12061-18133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_010 0.0 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
2 Hb_005074_040 0.0749921158 - - ATP binding protein, putative [Ricinus communis]
3 Hb_008025_010 0.0957140218 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
4 Hb_000689_050 0.0958030573 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_540 0.0962009691 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
6 Hb_002942_230 0.0987605323 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
7 Hb_001411_130 0.1047447755 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
8 Hb_002687_160 0.106451721 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
9 Hb_003847_040 0.1069533561 - - adenosine diphosphatase, putative [Ricinus communis]
10 Hb_000959_300 0.1081049558 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
11 Hb_002627_040 0.1116061019 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
12 Hb_000414_080 0.1138896698 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
13 Hb_026549_070 0.1138951124 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
14 Hb_004545_080 0.1158948001 - - protein with unknown function [Ricinus communis]
15 Hb_000585_110 0.118336342 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
16 Hb_000327_360 0.1184334925 - - unnamed protein product [Coffea canephora]
17 Hb_008725_270 0.1191484634 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
18 Hb_006829_060 0.119159449 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_012180_060 0.1203299544 - - peptidase, putative [Ricinus communis]
20 Hb_003994_080 0.120367518 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]

Gene co-expression network

sample Hb_014497_010 Hb_014497_010 Hb_005074_040 Hb_005074_040 Hb_014497_010--Hb_005074_040 Hb_008025_010 Hb_008025_010 Hb_014497_010--Hb_008025_010 Hb_000689_050 Hb_000689_050 Hb_014497_010--Hb_000689_050 Hb_000025_540 Hb_000025_540 Hb_014497_010--Hb_000025_540 Hb_002942_230 Hb_002942_230 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_005074_040--Hb_000689_050 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_005074_040--Hb_008025_010 Hb_003058_100 Hb_003058_100 Hb_008025_010--Hb_003058_100 Hb_003929_180 Hb_003929_180 Hb_008025_010--Hb_003929_180 Hb_008025_010--Hb_002942_230 Hb_003540_080 Hb_003540_080 Hb_008025_010--Hb_003540_080 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_003994_080 Hb_003994_080 Hb_000025_540--Hb_003994_080 Hb_002783_190 Hb_002783_190 Hb_000025_540--Hb_002783_190 Hb_138585_030 Hb_138585_030 Hb_000025_540--Hb_138585_030 Hb_002627_040 Hb_002627_040 Hb_000025_540--Hb_002627_040 Hb_002687_160 Hb_002687_160 Hb_000025_540--Hb_002687_160 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_002942_230--Hb_003540_080 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_000959_300 Hb_000959_300 Hb_001411_130--Hb_000959_300 Hb_001411_130--Hb_002217_080 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78528 3.88176 16.29 17.5893 2.56354 4.05837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66848 2.15555 3.69282 6.65571 16.3695

CAGE analysis