Hb_002627_040

Information

Type -
Description -
Location Contig2627: 124443-136057
Sequence    

Annotation

kegg
ID rcu:RCOM_0853250
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID XP_002517437.1
description prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
swissprot
ID Q8L970
description Probable prolyl 4-hydroxylase 7 OS=Arabidopsis thaliana GN=P4H7 PE=2 SV=1
trembl
ID B9RUJ2
description Prolyl 4-hydroxylase alpha subunit, putative OS=Ricinus communis GN=RCOM_0853250 PE=4 SV=1
Gene Ontology
ID GO:0004656
description probable prolyl 4-hydroxylase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27429: 131563-132222 , PASA_asmbl_27430: 133852-135990 , PASA_asmbl_27431: 130581-130955 , PASA_asmbl_27433: 129801-135966
cDNA
(Sanger)
(ID:Location)		 038_I06.ab1: 133852-135727

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002627_040 0.0 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
2 Hb_003680_220 0.0888788789 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
3 Hb_008725_270 0.08931484 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
4 Hb_002687_160 0.0894133362 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
5 Hb_000025_540 0.0923511637 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
6 Hb_138585_030 0.0933695777 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_070624_010 0.0937126116 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
8 Hb_002783_190 0.0976020514 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
9 Hb_001390_100 0.098958343 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
10 Hb_000116_250 0.0992313045 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
11 Hb_002871_040 0.1007072641 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
12 Hb_000926_060 0.1010446279 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009296_020 0.1016435078 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
14 Hb_101334_020 0.1061082027 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
15 Hb_005665_090 0.1061771352 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
16 Hb_001279_090 0.1066392783 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
17 Hb_000094_100 0.1076803197 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
18 Hb_006829_060 0.1083234522 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_000331_570 0.1090424202 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
20 Hb_000645_180 0.111023761 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002627_040 Hb_002627_040 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002687_160 Hb_002687_160 Hb_002627_040--Hb_002687_160 Hb_000025_540 Hb_000025_540 Hb_002627_040--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002627_040--Hb_138585_030 Hb_070624_010 Hb_070624_010 Hb_002627_040--Hb_070624_010 Hb_003680_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_003680_220--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_008725_270--Hb_002687_200 Hb_008725_270--Hb_000926_060 Hb_008725_270--Hb_000500_220 Hb_006829_060 Hb_006829_060 Hb_002687_160--Hb_006829_060 Hb_000979_130 Hb_000979_130 Hb_002687_160--Hb_000979_130 Hb_002687_160--Hb_000025_540 Hb_002687_160--Hb_008725_270 Hb_014497_010 Hb_014497_010 Hb_002687_160--Hb_014497_010 Hb_003994_080 Hb_003994_080 Hb_000025_540--Hb_003994_080 Hb_002783_190 Hb_002783_190 Hb_000025_540--Hb_002783_190 Hb_000025_540--Hb_138585_030 Hb_000025_540--Hb_014497_010 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_070624_010--Hb_000926_060 Hb_000358_210 Hb_000358_210 Hb_070624_010--Hb_000358_210 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2909 8.99064 41.943 25.2555 8.03607 5.63435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.80046 5.47495 10.3366 15.6157 30.2919

CAGE analysis