Hb_004545_080

Information

Type -
Description -
Location Contig4545: 103992-107726
Sequence    

Annotation

kegg
ID rcu:RCOM_0991060
description protein with unknown function
nr
ID XP_002520963.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9QYI4
description DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2
trembl
ID B9S4Q6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0991060 PE=4 SV=1
Gene Ontology
ID GO:0042578
description j domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43383: 103870-104310 , PASA_asmbl_43386: 106232-106944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_080 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000032_410 0.0859579884 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
3 Hb_000527_080 0.0953475171 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_003050_360 0.0992813829 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
5 Hb_002942_140 0.1013684471 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
6 Hb_000689_050 0.1032053382 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003175_070 0.1038932023 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
8 Hb_003740_020 0.1086794981 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_034579_020 0.1102895097 - - conserved hypothetical protein [Ricinus communis]
10 Hb_050847_040 0.1109783056 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
11 Hb_012180_060 0.1126096056 - - peptidase, putative [Ricinus communis]
12 Hb_006120_060 0.1153257034 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
13 Hb_014497_010 0.1158948001 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
14 Hb_005357_110 0.1160580321 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
15 Hb_000357_070 0.1164810479 - - -
16 Hb_000649_330 0.1178687724 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
17 Hb_001663_130 0.118199406 - - acyl-CoA thioesterase, putative [Ricinus communis]
18 Hb_000076_250 0.1182542827 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004730_020 0.1183157266 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
20 Hb_001160_110 0.1185070081 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_004545_080 Hb_004545_080 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_003050_360 Hb_003050_360 Hb_004545_080--Hb_003050_360 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070 Hb_005357_110 Hb_005357_110 Hb_000032_410--Hb_005357_110 Hb_000915_130 Hb_000915_130 Hb_000032_410--Hb_000915_130 Hb_005511_130 Hb_005511_130 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_000032_410--Hb_004730_020 Hb_000527_080--Hb_004730_020 Hb_001450_040 Hb_001450_040 Hb_000527_080--Hb_001450_040 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_003740_020 Hb_003740_020 Hb_000527_080--Hb_003740_020 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_002942_140--Hb_003050_360 Hb_000230_530 Hb_000230_530 Hb_002942_140--Hb_000230_530 Hb_002942_140--Hb_003175_070 Hb_002942_140--Hb_112064_010 Hb_010632_020 Hb_010632_020 Hb_002942_140--Hb_010632_020 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_000414_080 Hb_000414_080 Hb_003175_070--Hb_000414_080 Hb_000594_060 Hb_000594_060 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_007594_080 Hb_007594_080 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.544719 1.08261 3.68256 2.93324 0.379017 0.479736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18063 0.255865 0.381706 1.29552 2.31174

CAGE analysis