Hb_003175_070

Information

Type -
Description -
Location Contig3175: 45653-52035
Sequence    

Annotation

kegg
ID tcc:TCM_030310
description Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 1
nr
ID AIE47260.1
description pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
swissprot
ID Q41141
description Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1
trembl
ID A0A068LQF2
description Pyrophosphate-dependent phosphofructokinase (Fragment) OS=Hevea brasiliensis GN=PFP1 PE=2 SV=1
Gene Ontology
ID GO:0003872
description pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33448: 45637-51988 , PASA_asmbl_33449: 46381-46583
cDNA
(Sanger)
(ID:Location)		 041_C10.ab1: 45845-46134 , 053_F15.ab1: 50251-51908

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_070 0.0 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
2 Hb_000414_080 0.0929516222 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
3 Hb_000594_060 0.0947491063 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
4 Hb_003847_040 0.1020504709 - - adenosine diphosphatase, putative [Ricinus communis]
5 Hb_007594_080 0.1036439496 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
6 Hb_002675_080 0.1037877857 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
7 Hb_004545_080 0.1038932023 - - protein with unknown function [Ricinus communis]
8 Hb_001663_130 0.1040543136 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_002044_160 0.1042295964 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
10 Hb_004440_070 0.1073639791 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
11 Hb_004837_210 0.1079275807 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
12 Hb_001411_130 0.1137999805 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
13 Hb_002942_140 0.1141696154 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
14 Hb_000042_050 0.1141893586 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
15 Hb_000996_080 0.1145555291 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
16 Hb_003020_250 0.1154409673 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
17 Hb_000032_410 0.1163523482 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_000025_540 0.116556812 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
19 Hb_001021_210 0.1172645916 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_002627_040 0.1186065516 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003175_070 Hb_003175_070 Hb_000414_080 Hb_000414_080 Hb_003175_070--Hb_000414_080 Hb_000594_060 Hb_000594_060 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_007594_080 Hb_007594_080 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080 Hb_004545_080 Hb_004545_080 Hb_003175_070--Hb_004545_080 Hb_000487_370 Hb_000487_370 Hb_000414_080--Hb_000487_370 Hb_000510_190 Hb_000510_190 Hb_000414_080--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450 Hb_011188_010 Hb_011188_010 Hb_000594_060--Hb_011188_010 Hb_000594_060--Hb_000487_370 Hb_002432_050 Hb_002432_050 Hb_000594_060--Hb_002432_050 Hb_001663_130 Hb_001663_130 Hb_000594_060--Hb_001663_130 Hb_000594_060--Hb_000414_080 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_026549_070 Hb_026549_070 Hb_003847_040--Hb_026549_070 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_001195_660 Hb_001195_660 Hb_003847_040--Hb_001195_660 Hb_003847_040--Hb_000414_080 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_003050_360 Hb_003050_360 Hb_004545_080--Hb_003050_360 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3612 49.822 148.014 94.9266 28.2844 13.4585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0061 10.8433 16.052 41.5266 127.958

CAGE analysis