Hb_000032_410

Information

Type -
Description -
Location Contig32: 314343-320877
Sequence    

Annotation

kegg
ID rcu:RCOM_1692160
description dynamin, putative
nr
ID XP_012086708.1
description PREDICTED: dynamin-related protein 5A [Jatropha curcas]
swissprot
ID Q39828
description Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
trembl
ID A0A067JN46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20443 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33738: 314300-320697 , PASA_asmbl_33739: 314862-315069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_410 0.0 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
2 Hb_005357_110 0.0734365088 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
3 Hb_000915_130 0.0765624493 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
4 Hb_004545_080 0.0859579884 - - protein with unknown function [Ricinus communis]
5 Hb_005511_130 0.0875342731 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
6 Hb_029253_010 0.0925619442 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
7 Hb_004730_020 0.0927439141 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
8 Hb_001160_110 0.0933890806 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
9 Hb_001141_050 0.1031862977 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
10 Hb_000076_250 0.1046676531 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000968_060 0.1068368909 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_091318_010 0.1069270091 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
13 Hb_003740_020 0.1072896227 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_003687_080 0.1090273616 - - PREDICTED: casein kinase I-like [Jatropha curcas]
15 Hb_003175_070 0.1163523482 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
16 Hb_000000_480 0.1169926616 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
17 Hb_000689_050 0.1184141396 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000086_180 0.1198391768 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
19 Hb_001663_130 0.1200001083 - - acyl-CoA thioesterase, putative [Ricinus communis]
20 Hb_002900_150 0.1217996979 - - PREDICTED: syntaxin-81 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_410 Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_000032_410--Hb_005357_110 Hb_000915_130 Hb_000915_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_005511_130 Hb_005511_130 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_000032_410--Hb_004730_020 Hb_005357_110--Hb_029253_010 Hb_003740_020 Hb_003740_020 Hb_005357_110--Hb_003740_020 Hb_005357_110--Hb_000915_130 Hb_005357_110--Hb_004730_020 Hb_005357_110--Hb_005511_130 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_000915_130--Hb_004730_020 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_003050_360 Hb_003050_360 Hb_004545_080--Hb_003050_360 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_029253_010--Hb_003740_020 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_004730_020--Hb_000527_080 Hb_004730_020--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.56695 25.2012 73.4793 56.8559 8.56959 7.90776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.70608 5.39603 7.21761 15.5826 35.3171

CAGE analysis