Hb_000042_110

Information

Type -
Description -
Location Contig42: 125706-128237
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12550g
description POPTRDRAFT_568958; kinase family protein
nr
ID XP_012070636.1
description PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
swissprot
ID Q9LK35
description Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1
trembl
ID B9I000
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0011s12550g PE=3 SV=1
Gene Ontology
ID GO:0009506
description receptor-like protein kinase theseus 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_110 0.0 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
2 Hb_000260_490 0.0788240409 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
3 Hb_001847_060 0.0978292062 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Vitis vinifera]
4 Hb_000915_130 0.1063548059 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
5 Hb_011930_100 0.1122286762 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
6 Hb_000968_060 0.1161105968 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
7 Hb_001582_020 0.1221573234 - - plastid acyl-ACP thioesterase [Vernicia fordii]
8 Hb_003777_130 0.123420606 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
9 Hb_002686_300 0.1237870817 - - adenosine diphosphatase, putative [Ricinus communis]
10 Hb_003687_080 0.1244453068 - - PREDICTED: casein kinase I-like [Jatropha curcas]
11 Hb_007919_110 0.1258484593 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
12 Hb_002217_320 0.127259197 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
13 Hb_008494_030 0.1282723314 - - catalytic, putative [Ricinus communis]
14 Hb_002249_020 0.1292285631 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
15 Hb_004324_210 0.1300989058 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_005357_110 0.1310055263 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
17 Hb_000671_030 0.1315520068 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
18 Hb_000787_080 0.132218765 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
19 Hb_012753_210 0.1347539513 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
20 Hb_000815_310 0.1365155762 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000042_110 Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000042_110--Hb_000260_490 Hb_001847_060 Hb_001847_060 Hb_000042_110--Hb_001847_060 Hb_000915_130 Hb_000915_130 Hb_000042_110--Hb_000915_130 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000968_060 Hb_000968_060 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020 Hb_003687_080 Hb_003687_080 Hb_000260_490--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_000260_490--Hb_007919_110 Hb_074399_010 Hb_074399_010 Hb_000260_490--Hb_074399_010 Hb_002686_300 Hb_002686_300 Hb_000260_490--Hb_002686_300 Hb_005511_130 Hb_005511_130 Hb_000260_490--Hb_005511_130 Hb_001847_060--Hb_000260_490 Hb_001663_130 Hb_001663_130 Hb_001847_060--Hb_001663_130 Hb_000529_130 Hb_000529_130 Hb_001847_060--Hb_000529_130 Hb_001766_070 Hb_001766_070 Hb_001847_060--Hb_001766_070 Hb_003177_070 Hb_003177_070 Hb_001847_060--Hb_003177_070 Hb_000032_410 Hb_000032_410 Hb_000915_130--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_000915_130--Hb_005357_110 Hb_000915_130--Hb_005511_130 Hb_000915_130--Hb_000260_490 Hb_004730_020 Hb_004730_020 Hb_000915_130--Hb_004730_020 Hb_000045_160 Hb_000045_160 Hb_011930_100--Hb_000045_160 Hb_000815_310 Hb_000815_310 Hb_011930_100--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_011930_100--Hb_003777_130 Hb_000640_190 Hb_000640_190 Hb_011930_100--Hb_000640_190 Hb_001396_070 Hb_001396_070 Hb_011930_100--Hb_001396_070 Hb_033152_090 Hb_033152_090 Hb_011930_100--Hb_033152_090 Hb_002488_010 Hb_002488_010 Hb_000968_060--Hb_002488_010 Hb_002900_150 Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000866_070 Hb_000866_070 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000968_060--Hb_000032_410 Hb_002249_020 Hb_002249_020 Hb_001582_020--Hb_002249_020 Hb_001582_020--Hb_033152_090 Hb_012753_210 Hb_012753_210 Hb_001582_020--Hb_012753_210 Hb_000787_080 Hb_000787_080 Hb_001582_020--Hb_000787_080 Hb_000258_420 Hb_000258_420 Hb_001582_020--Hb_000258_420 Hb_006846_170 Hb_006846_170 Hb_001582_020--Hb_006846_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.766 23.272 35.5998 35.1588 10.4171 6.06247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.08177 2.70137 6.11866 5.00377 21.6337

CAGE analysis