Hb_002900_150

Information

Type -
Description -
Location Contig2900: 185428-190343
Sequence    

Annotation

kegg
ID rcu:RCOM_0587330
description Syntaxin-81, putative
nr
ID XP_012086173.1
description PREDICTED: syntaxin-81 [Jatropha curcas]
swissprot
ID P59277
description Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=1 SV=2
trembl
ID A0A067JQ96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21095 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30413: 182328-192207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_150 0.0 - - PREDICTED: syntaxin-81 [Jatropha curcas]
2 Hb_000968_060 0.0881828228 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
3 Hb_000866_070 0.1028785509 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
4 Hb_002488_010 0.1071820549 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
5 Hb_005511_130 0.1101120972 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
6 Hb_004158_050 0.1118452201 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
7 Hb_005357_110 0.1129193775 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
8 Hb_001328_050 0.1136061554 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
9 Hb_000001_090 0.1141633557 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
10 Hb_003849_160 0.1194166354 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
11 Hb_000915_130 0.1197920675 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
12 Hb_004730_020 0.1203607879 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
13 Hb_003687_080 0.1209178652 - - PREDICTED: casein kinase I-like [Jatropha curcas]
14 Hb_000032_410 0.1217996979 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
15 Hb_002498_240 0.1230634653 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
16 Hb_008494_030 0.1251168322 - - catalytic, putative [Ricinus communis]
17 Hb_002026_020 0.1268364745 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
18 Hb_002026_090 0.1294977037 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
19 Hb_000984_220 0.1319947362 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
20 Hb_164010_050 0.1322849422 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]

Gene co-expression network

sample Hb_002900_150 Hb_002900_150 Hb_000968_060 Hb_000968_060 Hb_002900_150--Hb_000968_060 Hb_000866_070 Hb_000866_070 Hb_002900_150--Hb_000866_070 Hb_002488_010 Hb_002488_010 Hb_002900_150--Hb_002488_010 Hb_005511_130 Hb_005511_130 Hb_002900_150--Hb_005511_130 Hb_004158_050 Hb_004158_050 Hb_002900_150--Hb_004158_050 Hb_005357_110 Hb_005357_110 Hb_002900_150--Hb_005357_110 Hb_000968_060--Hb_002488_010 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_000866_070--Hb_000001_090 Hb_002942_230 Hb_002942_230 Hb_000866_070--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_001411_130 Hb_001411_130 Hb_000866_070--Hb_001411_130 Hb_002217_080 Hb_002217_080 Hb_000866_070--Hb_002217_080 Hb_000959_300 Hb_000959_300 Hb_002488_010--Hb_000959_300 Hb_002488_010--Hb_000866_070 Hb_012762_060 Hb_012762_060 Hb_002488_010--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_002488_010--Hb_003680_030 Hb_004730_020 Hb_004730_020 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005511_130--Hb_005357_110 Hb_002026_090 Hb_002026_090 Hb_004158_050--Hb_002026_090 Hb_000327_330 Hb_000327_330 Hb_004158_050--Hb_000327_330 Hb_001623_490 Hb_001623_490 Hb_004158_050--Hb_001623_490 Hb_004158_050--Hb_003687_080 Hb_007594_080 Hb_007594_080 Hb_004158_050--Hb_007594_080 Hb_001160_110 Hb_001160_110 Hb_004158_050--Hb_001160_110 Hb_005357_110--Hb_000032_410 Hb_029253_010 Hb_029253_010 Hb_005357_110--Hb_029253_010 Hb_003740_020 Hb_003740_020 Hb_005357_110--Hb_003740_020 Hb_005357_110--Hb_000915_130 Hb_005357_110--Hb_004730_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759659 1.93524 4.09376 3.90143 0.829 1.13689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.272014 0.641777 0.23534 0.740914 2.17896

CAGE analysis