Hb_001160_110

Information

Type -
Description -
Location Contig1160: 55648-59749
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16880g
description POPTRDRAFT_418782; phragmoplast-associated kinesin-related protein 2
nr
ID XP_012069867.1
description PREDICTED: kinesin-related protein 13 [Jatropha curcas]
swissprot
ID Q07970
description Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1
trembl
ID A0A067KZF9
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_02356 PE=3 SV=1
Gene Ontology
ID GO:0005871
description phragmoplast-associated kinesin-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04923: 52218-54931 , PASA_asmbl_04925: 58266-59675
cDNA
(Sanger)
(ID:Location)		 028_K07.ab1: 52248-54660 , 036_E17.ab1: 52248-54664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_110 0.0 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
2 Hb_003687_080 0.0669290865 - - PREDICTED: casein kinase I-like [Jatropha curcas]
3 Hb_003160_070 0.0843552565 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
4 Hb_001663_130 0.084379538 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_002026_090 0.0900302738 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
6 Hb_000032_410 0.0933890806 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
7 Hb_004158_050 0.101134139 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
8 Hb_074399_010 0.1013803286 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
9 Hb_001623_490 0.1016580905 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
10 Hb_000327_330 0.1021046618 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005665_090 0.1022803919 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
12 Hb_007594_080 0.1040047412 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
13 Hb_000086_180 0.1056388217 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
14 Hb_012779_080 0.1069167414 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
15 Hb_005511_130 0.1076335587 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
16 Hb_004013_030 0.1085201208 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
17 Hb_000001_090 0.1087438913 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
18 Hb_000260_490 0.1098934233 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
19 Hb_002498_240 0.111077018 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
20 Hb_011381_040 0.113899955 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001160_110 Hb_001160_110 Hb_003687_080 Hb_003687_080 Hb_001160_110--Hb_003687_080 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_001663_130 Hb_001663_130 Hb_001160_110--Hb_001663_130 Hb_002026_090 Hb_002026_090 Hb_001160_110--Hb_002026_090 Hb_000032_410 Hb_000032_410 Hb_001160_110--Hb_000032_410 Hb_004158_050 Hb_004158_050 Hb_001160_110--Hb_004158_050 Hb_000327_330 Hb_000327_330 Hb_003687_080--Hb_000327_330 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220 Hb_005665_090 Hb_005665_090 Hb_003160_070--Hb_005665_090 Hb_029695_070 Hb_029695_070 Hb_003160_070--Hb_029695_070 Hb_003640_050 Hb_003640_050 Hb_003160_070--Hb_003640_050 Hb_012779_080 Hb_012779_080 Hb_003160_070--Hb_012779_080 Hb_000792_050 Hb_000792_050 Hb_003160_070--Hb_000792_050 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_002026_090--Hb_004158_050 Hb_001623_490 Hb_001623_490 Hb_002026_090--Hb_001623_490 Hb_002026_090--Hb_000327_330 Hb_002026_090--Hb_001663_130 Hb_002026_090--Hb_003687_080 Hb_005357_110 Hb_005357_110 Hb_000032_410--Hb_005357_110 Hb_000915_130 Hb_000915_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_000032_410--Hb_004730_020 Hb_004158_050--Hb_000327_330 Hb_004158_050--Hb_001623_490 Hb_004158_050--Hb_003687_080 Hb_004158_050--Hb_007594_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48712 2.45451 8.84959 4.77616 1.25529 1.40621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.939659 0.750647 1.0719 1.79951 3.80198

CAGE analysis