Hb_000792_050

Information

Type -
Description -
Location Contig792: 105605-111866
Sequence    

Annotation

kegg
ID rcu:RCOM_0085190
description carboxyl-tansferase, subunit of Het-ACCase (EC:6.4.1.2)
nr
ID XP_012087926.1
description PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LD43
description Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1
trembl
ID A0A067JWV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25059 PE=3 SV=1
Gene Ontology
ID GO:0009317
description acetyl co-enzyme a carboxylase carboxyltransferase alpha subunit family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58395: 105588-111797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_050 0.0 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001922_110 0.107712771 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000227_400 0.1192022539 - - lipoxygenase, putative [Ricinus communis]
4 Hb_001141_050 0.120139463 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
5 Hb_003160_070 0.1213330747 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
6 Hb_003397_030 0.1245388369 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
7 Hb_000996_080 0.1269768123 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
8 Hb_005527_060 0.128382684 - - malic enzyme, putative [Ricinus communis]
9 Hb_002942_120 0.1330873278 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_003894_060 0.13313423 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002701_070 0.1369085328 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
12 Hb_000120_300 0.1401486277 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
13 Hb_002432_050 0.140153956 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
14 Hb_021346_050 0.1412930804 - - xylulose kinase, putative [Ricinus communis]
15 Hb_000958_120 0.1418603334 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
16 Hb_000076_250 0.1419087126 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000169_070 0.1427441922 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
18 Hb_034579_020 0.1443726306 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001001_120 0.1443864201 - - protein phosphatase, putative [Ricinus communis]
20 Hb_000940_030 0.145822889 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000792_050 Hb_000792_050 Hb_001922_110 Hb_001922_110 Hb_000792_050--Hb_001922_110 Hb_000227_400 Hb_000227_400 Hb_000792_050--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_000792_050--Hb_001141_050 Hb_003160_070 Hb_003160_070 Hb_000792_050--Hb_003160_070 Hb_003397_030 Hb_003397_030 Hb_000792_050--Hb_003397_030 Hb_000996_080 Hb_000996_080 Hb_000792_050--Hb_000996_080 Hb_001922_110--Hb_000227_400 Hb_001922_110--Hb_001141_050 Hb_000958_120 Hb_000958_120 Hb_001922_110--Hb_000958_120 Hb_010868_040 Hb_010868_040 Hb_001922_110--Hb_010868_040 Hb_008511_040 Hb_008511_040 Hb_001922_110--Hb_008511_040 Hb_000227_400--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000227_400--Hb_004855_020 Hb_000207_350 Hb_000207_350 Hb_000227_400--Hb_000207_350 Hb_000227_400--Hb_000958_120 Hb_000243_060 Hb_000243_060 Hb_000227_400--Hb_000243_060 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_001160_110 Hb_001160_110 Hb_003160_070--Hb_001160_110 Hb_005665_090 Hb_005665_090 Hb_003160_070--Hb_005665_090 Hb_029695_070 Hb_029695_070 Hb_003160_070--Hb_029695_070 Hb_003160_070--Hb_003640_050 Hb_012779_080 Hb_012779_080 Hb_003160_070--Hb_012779_080 Hb_001386_090 Hb_001386_090 Hb_003397_030--Hb_001386_090 Hb_000169_070 Hb_000169_070 Hb_003397_030--Hb_000169_070 Hb_001711_060 Hb_001711_060 Hb_003397_030--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_003397_030--Hb_004517_030 Hb_000438_130 Hb_000438_130 Hb_003397_030--Hb_000438_130 Hb_003020_250 Hb_003020_250 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.2053 5.58385 39.0074 14.5835 0.929772 3.27333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12393 1.17657 2.1678 6.98974 18.992

CAGE analysis