Hb_000438_130

Information

Type -
Description -
Location Contig438: 114404-118571
Sequence    

Annotation

kegg
ID rcu:RCOM_0689410
description uroporphyrinogen decarboxylase, putative (EC:4.1.1.37)
nr
ID XP_002520842.1
description uroporphyrinogen decarboxylase, putative [Ricinus communis]
swissprot
ID Q42967
description Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1
trembl
ID B9S4C3
description Uroporphyrinogen decarboxylase OS=Ricinus communis GN=RCOM_0689410 PE=3 SV=1
Gene Ontology
ID GO:0009570
description uroporphyrinogen decarboxylase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42567: 114355-118511 , PASA_asmbl_42569: 119559-124732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_130 0.0 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
2 Hb_001386_090 0.0779877746 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
3 Hb_000392_450 0.1108782703 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
4 Hb_001711_060 0.1194126823 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
5 Hb_002027_320 0.1207533535 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
6 Hb_012653_030 0.1237918856 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_003397_030 0.1255596925 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
8 Hb_004517_030 0.1280091487 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007263_010 0.1382959577 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_000181_060 0.1387245012 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
11 Hb_000816_210 0.1395205587 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
12 Hb_006252_030 0.1397599894 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
13 Hb_000169_070 0.1420377973 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
14 Hb_000194_010 0.1425447136 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
15 Hb_001519_170 0.1438325912 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
16 Hb_001301_330 0.1439104557 - - OTU-like cysteine protease family protein [Populus trichocarpa]
17 Hb_003874_010 0.1439696729 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
18 Hb_004221_030 0.1488906285 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
19 Hb_000538_130 0.149030404 - - phytoene synthase 2 [Manihot esculenta]
20 Hb_000061_150 0.1500441843 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000438_130 Hb_000438_130 Hb_001386_090 Hb_001386_090 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_001711_060 Hb_001711_060 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_003397_030 Hb_003397_030 Hb_000438_130--Hb_003397_030 Hb_001386_090--Hb_003397_030 Hb_001386_090--Hb_001711_060 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_001386_090--Hb_000392_450 Hb_000392_450--Hb_004517_030 Hb_007263_010 Hb_007263_010 Hb_000392_450--Hb_007263_010 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_001519_170 Hb_001519_170 Hb_001711_060--Hb_001519_170 Hb_001711_060--Hb_003397_030 Hb_001711_060--Hb_012653_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_002027_320--Hb_007263_010 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_000194_010 Hb_000194_010 Hb_012653_030--Hb_000194_010 Hb_005618_080 Hb_005618_080 Hb_012653_030--Hb_005618_080 Hb_002044_020 Hb_002044_020 Hb_012653_030--Hb_002044_020 Hb_000473_050 Hb_000473_050 Hb_012653_030--Hb_000473_050 Hb_003397_030--Hb_000169_070 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.21807 2.84014 64.8828 13.9385 7.51724 7.94986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0013 6.47333 6.59885 3.56869 25.8441

CAGE analysis