Hb_012653_030

Information

Type -
Description -
Location Contig12653: 45352-53303
Sequence    

Annotation

kegg
ID rcu:RCOM_0770820
description ribose-5-phosphate isomerase, putative (EC:5.3.1.6)
nr
ID XP_012075538.1
description PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9FI13
description Probable ribose-5-phosphate isomerase 4, chloroplastic OS=Arabidopsis thaliana GN=RPI4 PE=2 SV=1
trembl
ID A0A067KF67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09159 PE=4 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07992: 45316-53173 , PASA_asmbl_07993: 45364-53282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012653_030 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000194_010 0.1071102179 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
3 Hb_005618_080 0.1081340825 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
4 Hb_002044_020 0.1146156035 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
5 Hb_001711_060 0.1184791258 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
6 Hb_000438_130 0.1237918856 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
7 Hb_000473_050 0.1253211866 - - chromatin regulatory protein sir2, putative [Ricinus communis]
8 Hb_169209_010 0.1267285495 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
9 Hb_006252_030 0.1272203126 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
10 Hb_001386_090 0.128551134 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
11 Hb_001959_060 0.1288946236 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
12 Hb_000005_130 0.1295981426 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
13 Hb_003549_140 0.130520986 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_000802_050 0.1317770143 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
15 Hb_000181_060 0.1326444872 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
16 Hb_000061_150 0.1329621463 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
17 Hb_163950_070 0.1349701226 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
18 Hb_003397_030 0.1351314599 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
19 Hb_002498_160 0.1364600595 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
20 Hb_000402_020 0.1411332712 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012653_030 Hb_012653_030 Hb_000194_010 Hb_000194_010 Hb_012653_030--Hb_000194_010 Hb_005618_080 Hb_005618_080 Hb_012653_030--Hb_005618_080 Hb_002044_020 Hb_002044_020 Hb_012653_030--Hb_002044_020 Hb_001711_060 Hb_001711_060 Hb_012653_030--Hb_001711_060 Hb_000438_130 Hb_000438_130 Hb_012653_030--Hb_000438_130 Hb_000473_050 Hb_000473_050 Hb_012653_030--Hb_000473_050 Hb_000061_150 Hb_000061_150 Hb_000194_010--Hb_000061_150 Hb_001454_150 Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_000976_190 Hb_000976_190 Hb_000194_010--Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000194_010--Hb_011310_140 Hb_001959_060 Hb_001959_060 Hb_005618_080--Hb_001959_060 Hb_000402_020 Hb_000402_020 Hb_005618_080--Hb_000402_020 Hb_005116_100 Hb_005116_100 Hb_005618_080--Hb_005116_100 Hb_000056_310 Hb_000056_310 Hb_005618_080--Hb_000056_310 Hb_006829_080 Hb_006829_080 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_000094_100 Hb_000094_100 Hb_002044_020--Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_002044_020--Hb_001789_160 Hb_002044_020--Hb_000061_150 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_001386_090 Hb_001386_090 Hb_001711_060--Hb_001386_090 Hb_001519_170 Hb_001519_170 Hb_001711_060--Hb_001519_170 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_001711_060--Hb_000438_130 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_000438_130--Hb_003397_030 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02841 0.548427 13.6985 3.49599 1.342 1.70636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71556 1.7477 1.56444 1.97112 9.97355

CAGE analysis