Hb_000056_310

Information

Type -
Description -
Location Contig56: 439886-444357
Sequence    

Annotation

kegg
ID rcu:RCOM_0836320
description prenyl-dependent CAAX protease, putative
nr
ID XP_012067634.1
description PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15599 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prenyl-dependent caax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48738: 439823-444383 , PASA_asmbl_48739: 440503-441218 , PASA_asmbl_48740: 440095-441961 , PASA_asmbl_48741: 440541-441988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_310 0.0 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
2 Hb_148146_010 0.0817412405 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
3 Hb_006252_030 0.0846416611 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
4 Hb_005618_080 0.0863950421 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
5 Hb_000009_020 0.0870298468 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
6 Hb_001953_100 0.0927123398 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
7 Hb_000749_200 0.0987094203 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
8 Hb_000322_040 0.1014101315 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
9 Hb_000402_020 0.1019973807 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002005_040 0.1077814676 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_003683_030 0.1081183302 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
12 Hb_004837_210 0.1086997188 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
13 Hb_000094_100 0.1103666637 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
14 Hb_000802_050 0.1110919281 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
15 Hb_001959_060 0.1127308967 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
16 Hb_000684_430 0.113804645 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
17 Hb_005116_100 0.1149417588 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
18 Hb_000035_210 0.1158558783 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
19 Hb_005074_050 0.1164341381 - - PREDICTED: myosin-6-like [Jatropha curcas]
20 Hb_002400_010 0.116607585 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_310 Hb_000056_310 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_000322_040 Hb_000322_040 Hb_006252_030--Hb_000322_040 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_006252_030--Hb_005618_080 Hb_006252_030--Hb_000749_200 Hb_002498_170 Hb_002498_170 Hb_006252_030--Hb_002498_170 Hb_005618_080--Hb_001959_060 Hb_000402_020 Hb_000402_020 Hb_005618_080--Hb_000402_020 Hb_005618_080--Hb_005116_100 Hb_006829_080 Hb_006829_080 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_000009_020--Hb_001953_100 Hb_030131_020 Hb_030131_020 Hb_000009_020--Hb_030131_020 Hb_000035_210 Hb_000035_210 Hb_000009_020--Hb_000035_210 Hb_003683_030 Hb_003683_030 Hb_000009_020--Hb_003683_030 Hb_000009_020--Hb_004837_210 Hb_001953_100--Hb_003683_030 Hb_001953_100--Hb_148146_010 Hb_001953_100--Hb_004837_210 Hb_001953_100--Hb_000035_210 Hb_000749_200--Hb_003683_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000934_260 Hb_000934_260 Hb_000749_200--Hb_000934_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76265 4.81075 33.624 9.46463 4.60182 4.87705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79107 2.56204 2.29663 4.90844 27.7023

CAGE analysis