Hb_000035_210

Information

Type -
Description -
Location Contig35: 263812-269254
Sequence    

Annotation

kegg
ID rcu:RCOM_0920880
description protein binding protein, putative
nr
ID XP_012076425.1
description PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
swissprot
ID Q8H1D3
description BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1
trembl
ID B9RNV5
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0920880 PE=4 SV=1
Gene Ontology
ID GO:0005886
description btb poz domain-containing protein npy1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36414: 263836-269773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_210 0.0 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
2 Hb_000094_100 0.1124283915 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
3 Hb_000009_020 0.1146878108 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
4 Hb_000056_310 0.1158558783 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
5 Hb_001953_100 0.1204486064 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
6 Hb_002044_020 0.1214188119 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
7 Hb_004837_210 0.1273069066 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
8 Hb_001689_050 0.1291394506 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
9 Hb_004052_070 0.1309427556 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
10 Hb_003160_070 0.1316520419 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
11 Hb_002498_170 0.1346558839 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_007594_080 0.1351345381 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
13 Hb_030131_020 0.1357371104 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
14 Hb_001001_120 0.1360157784 - - protein phosphatase, putative [Ricinus communis]
15 Hb_001789_160 0.1369711324 - - PREDICTED: putative transporter arsB [Jatropha curcas]
16 Hb_153553_040 0.1410746071 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
17 Hb_003683_030 0.1415266748 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
18 Hb_148146_010 0.1422828227 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
19 Hb_006252_030 0.1439250357 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
20 Hb_001279_090 0.143978088 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_210 Hb_000035_210 Hb_000094_100 Hb_000094_100 Hb_000035_210--Hb_000094_100 Hb_000009_020 Hb_000009_020 Hb_000035_210--Hb_000009_020 Hb_000056_310 Hb_000056_310 Hb_000035_210--Hb_000056_310 Hb_001953_100 Hb_001953_100 Hb_000035_210--Hb_001953_100 Hb_002044_020 Hb_002044_020 Hb_000035_210--Hb_002044_020 Hb_004837_210 Hb_004837_210 Hb_000035_210--Hb_004837_210 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_000009_020--Hb_001953_100 Hb_000009_020--Hb_000056_310 Hb_030131_020 Hb_030131_020 Hb_000009_020--Hb_030131_020 Hb_003683_030 Hb_003683_030 Hb_000009_020--Hb_003683_030 Hb_000009_020--Hb_004837_210 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200 Hb_001953_100--Hb_003683_030 Hb_001953_100--Hb_148146_010 Hb_001953_100--Hb_004837_210 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_002044_020--Hb_000094_100 Hb_002044_020--Hb_001789_160 Hb_000061_150 Hb_000061_150 Hb_002044_020--Hb_000061_150 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_004837_210--Hb_148146_010 Hb_004837_210--Hb_003683_030 Hb_004837_210--Hb_000094_100 Hb_004837_210--Hb_012779_080 Hb_002928_030 Hb_002928_030 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29779 4.07343 31.856 9.50157 5.35499 4.77044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32434 1.28963 5.42022 4.73118 20.4063

CAGE analysis