Hb_004837_210

Information

Type -
Description -
Location Contig4837: 182657-187079
Sequence    

Annotation

kegg
ID rcu:RCOM_1577820
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012090018.1
description PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
swissprot
ID Q42438
description Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1
trembl
ID A0A067JE09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25932 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44887: 182061-186996 , PASA_asmbl_44888: 184491-186997
cDNA
(Sanger)
(ID:Location)		 025_P13.ab1: 184491-186055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_210 0.0 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
2 Hb_148146_010 0.0903817201 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
3 Hb_003683_030 0.0913210491 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
4 Hb_000094_100 0.0929874988 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
5 Hb_012779_080 0.0935010405 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
6 Hb_002928_030 0.0972413275 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
7 Hb_005074_050 0.0983879659 - - PREDICTED: myosin-6-like [Jatropha curcas]
8 Hb_001953_100 0.1024050253 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
9 Hb_001663_130 0.1032904762 - - acyl-CoA thioesterase, putative [Ricinus communis]
10 Hb_002005_040 0.1070103526 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_003175_070 0.1079275807 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
12 Hb_005665_090 0.1079670665 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
13 Hb_000056_310 0.1086997188 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
14 Hb_007594_080 0.1095711102 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
15 Hb_164926_010 0.1096909609 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
16 Hb_000482_050 0.1106555204 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
17 Hb_009288_040 0.1111628055 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
18 Hb_001396_020 0.1118033423 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_002044_160 0.1119374358 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
20 Hb_004629_030 0.111974978 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004837_210 Hb_004837_210 Hb_148146_010 Hb_148146_010 Hb_004837_210--Hb_148146_010 Hb_003683_030 Hb_003683_030 Hb_004837_210--Hb_003683_030 Hb_000094_100 Hb_000094_100 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_002928_030 Hb_002928_030 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050 Hb_000056_310 Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_148146_010--Hb_002928_030 Hb_000749_200 Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_001953_100 Hb_001953_100 Hb_003683_030--Hb_001953_100 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_005074_050--Hb_148146_010 Hb_005074_050--Hb_003683_030 Hb_003664_030 Hb_003664_030 Hb_005074_050--Hb_003664_030 Hb_003640_050 Hb_003640_050 Hb_005074_050--Hb_003640_050 Hb_005074_050--Hb_000056_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.52355 11.9877 40.7348 16.8478 5.97007 6.32944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78292 2.87445 4.79779 9.68824 38.9391

CAGE analysis