Hb_003640_050

Information

Type -
Description -
Location Contig3640: 37656-42628
Sequence    

Annotation

kegg
ID rcu:RCOM_1437260
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_012088785.1
description PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q93VK5
description Protein LUTEIN DEFICIENT 5, chloroplastic OS=Arabidopsis thaliana GN=CYP97A3 PE=1 SV=1
trembl
ID A0A067JHH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23140 PE=3 SV=1
Gene Ontology
ID GO:0005506
description protein lutein deficient chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37475: 37768-42567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003640_050 0.0 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000076_250 0.1029014287 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000996_080 0.103471312 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
4 Hb_005665_090 0.1140199389 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
5 Hb_005074_050 0.1142560842 - - PREDICTED: myosin-6-like [Jatropha curcas]
6 Hb_003160_070 0.1157864636 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
7 Hb_001141_050 0.1162554207 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
8 Hb_002045_090 0.1205488834 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
9 Hb_001160_110 0.1207464858 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
10 Hb_000032_410 0.1232312719 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
11 Hb_000327_200 0.1245513491 - - glutathione-s-transferase omega, putative [Ricinus communis]
12 Hb_000958_120 0.1251439889 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
13 Hb_005217_030 0.1267949549 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
14 Hb_003752_090 0.1275293887 - - chitinase, putative [Ricinus communis]
15 Hb_003020_250 0.1321292789 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
16 Hb_001922_110 0.1334693948 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003687_080 0.1344928907 - - PREDICTED: casein kinase I-like [Jatropha curcas]
18 Hb_008494_030 0.1351574938 - - catalytic, putative [Ricinus communis]
19 Hb_012779_080 0.1353594774 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
20 Hb_000749_200 0.1363078296 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003640_050 Hb_003640_050 Hb_000076_250 Hb_000076_250 Hb_003640_050--Hb_000076_250 Hb_000996_080 Hb_000996_080 Hb_003640_050--Hb_000996_080 Hb_005665_090 Hb_005665_090 Hb_003640_050--Hb_005665_090 Hb_005074_050 Hb_005074_050 Hb_003640_050--Hb_005074_050 Hb_003160_070 Hb_003160_070 Hb_003640_050--Hb_003160_070 Hb_001141_050 Hb_001141_050 Hb_003640_050--Hb_001141_050 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_012779_080 Hb_012779_080 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050 Hb_148146_010 Hb_148146_010 Hb_005074_050--Hb_148146_010 Hb_004837_210 Hb_004837_210 Hb_005074_050--Hb_004837_210 Hb_003683_030 Hb_003683_030 Hb_005074_050--Hb_003683_030 Hb_003664_030 Hb_003664_030 Hb_005074_050--Hb_003664_030 Hb_000056_310 Hb_000056_310 Hb_005074_050--Hb_000056_310 Hb_001160_110 Hb_001160_110 Hb_003160_070--Hb_001160_110 Hb_003160_070--Hb_005665_090 Hb_029695_070 Hb_029695_070 Hb_003160_070--Hb_029695_070 Hb_003160_070--Hb_012779_080 Hb_000792_050 Hb_000792_050 Hb_003160_070--Hb_000792_050 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_001141_050--Hb_000076_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0349 31.0823 128.348 68.3662 10.566 13.3107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6775 8.63853 8.94399 16.4753 73.7509

CAGE analysis