Hb_003683_030

Information

Type -
Description -
Location Contig3683: 54906-61343
Sequence    

Annotation

kegg
ID rcu:RCOM_1619070
description uridine cytidine kinase I, putative (EC:2.7.1.48)
nr
ID XP_012092914.1
description PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
swissprot
ID Q54R62
description Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1
trembl
ID E6NU51
description Uridine kinase OS=Jatropha curcas GN=JHL10I11.7 PE=4 SV=1
Gene Ontology
ID GO:0005524
description uridine-cytidine kinase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37869: 54243-61407 , PASA_asmbl_37870: 54228-61407
cDNA
(Sanger)
(ID:Location)		 009_P12.ab1: 61200-61407

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_030 0.0 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
2 Hb_000749_200 0.0694436731 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
3 Hb_001689_050 0.0889430331 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
4 Hb_003894_060 0.0903077053 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004837_210 0.0913210491 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
6 Hb_001250_040 0.0917482342 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
7 Hb_001953_100 0.0996346632 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
8 Hb_001663_130 0.1006220128 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_002447_050 0.1028148594 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_007594_080 0.1031493454 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
11 Hb_000331_340 0.1035994258 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
12 Hb_005074_050 0.1060704437 - - PREDICTED: myosin-6-like [Jatropha curcas]
13 Hb_000056_310 0.1081183302 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
14 Hb_000009_020 0.1169922183 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
15 Hb_153553_040 0.1181173419 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
16 Hb_000934_260 0.1182491582 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_006252_030 0.1193655038 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
18 Hb_148146_010 0.1230241223 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
19 Hb_000302_190 0.1265450665 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
20 Hb_003175_070 0.1272159724 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_003683_030 Hb_003683_030 Hb_000749_200 Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_003683_030--Hb_004837_210 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_001953_100 Hb_001953_100 Hb_003683_030--Hb_001953_100 Hb_000056_310 Hb_000056_310 Hb_000749_200--Hb_000056_310 Hb_006252_030 Hb_006252_030 Hb_000749_200--Hb_006252_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000934_260 Hb_000934_260 Hb_000749_200--Hb_000934_260 Hb_001689_050--Hb_001250_040 Hb_007594_080 Hb_007594_080 Hb_001689_050--Hb_007594_080 Hb_001689_050--Hb_003894_060 Hb_001689_050--Hb_004837_210 Hb_001689_050--Hb_001953_100 Hb_001663_130 Hb_001663_130 Hb_003894_060--Hb_001663_130 Hb_005214_070 Hb_005214_070 Hb_003894_060--Hb_005214_070 Hb_000093_140 Hb_000093_140 Hb_003894_060--Hb_000093_140 Hb_001001_090 Hb_001001_090 Hb_003894_060--Hb_001001_090 Hb_002432_050 Hb_002432_050 Hb_003894_060--Hb_002432_050 Hb_148146_010 Hb_148146_010 Hb_004837_210--Hb_148146_010 Hb_000094_100 Hb_000094_100 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_002928_030 Hb_002928_030 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040 Hb_000009_020 Hb_000009_020 Hb_001953_100--Hb_000009_020 Hb_001953_100--Hb_000056_310 Hb_001953_100--Hb_148146_010 Hb_001953_100--Hb_004837_210 Hb_000035_210 Hb_000035_210 Hb_001953_100--Hb_000035_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0529 24.2448 83.8637 28.6023 14.8217 11.9978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.59849 4.72466 3.25103 11.9984 60.1695

CAGE analysis