Hb_001953_100

Information

Type -
Description -
Location Contig1953: 111954-114493
Sequence    

Annotation

kegg
ID rcu:RCOM_0686430
description glutamate-1-semialdehyde 2,1-aminomutase, putative (EC:5.4.3.8)
nr
ID XP_012090641.1
description PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q42522
description Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2
trembl
ID A0A067JFF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26408 PE=3 SV=1
Gene Ontology
ID GO:0008483
description glutamate-1-semialdehyde -aminomutase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19563: 111819-114522
cDNA
(Sanger)
(ID:Location)		 026_G19.ab1: 113904-114511

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_100 0.0 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
2 Hb_000009_020 0.0836504158 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
3 Hb_000056_310 0.0927123398 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
4 Hb_003683_030 0.0996346632 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
5 Hb_148146_010 0.09987445 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
6 Hb_004837_210 0.1024050253 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
7 Hb_000035_210 0.1204486064 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
8 Hb_001689_050 0.1210970312 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
9 Hb_004324_120 0.1235098586 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
10 Hb_004635_070 0.1268186266 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
11 Hb_005074_050 0.1282508319 - - PREDICTED: myosin-6-like [Jatropha curcas]
12 Hb_000093_140 0.128681253 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
13 Hb_007894_190 0.1291666897 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
14 Hb_001001_120 0.1292415443 - - protein phosphatase, putative [Ricinus communis]
15 Hb_003894_060 0.1293619887 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000094_100 0.1324571222 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
17 Hb_000331_340 0.1332516854 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
18 Hb_004346_040 0.1338063128 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
19 Hb_001365_030 0.135398882 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
20 Hb_153553_040 0.1355677302 - - hypothetical protein JCGZ_19478 [Jatropha curcas]

Gene co-expression network

sample Hb_001953_100 Hb_001953_100 Hb_000009_020 Hb_000009_020 Hb_001953_100--Hb_000009_020 Hb_000056_310 Hb_000056_310 Hb_001953_100--Hb_000056_310 Hb_003683_030 Hb_003683_030 Hb_001953_100--Hb_003683_030 Hb_148146_010 Hb_148146_010 Hb_001953_100--Hb_148146_010 Hb_004837_210 Hb_004837_210 Hb_001953_100--Hb_004837_210 Hb_000035_210 Hb_000035_210 Hb_001953_100--Hb_000035_210 Hb_000009_020--Hb_000056_310 Hb_030131_020 Hb_030131_020 Hb_000009_020--Hb_030131_020 Hb_000009_020--Hb_000035_210 Hb_000009_020--Hb_003683_030 Hb_000009_020--Hb_004837_210 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_003683_030--Hb_004837_210 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_000094_100 Hb_000094_100 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050 Hb_000035_210--Hb_000094_100 Hb_000035_210--Hb_000056_310 Hb_002044_020 Hb_002044_020 Hb_000035_210--Hb_002044_020 Hb_000035_210--Hb_004837_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5221 51.3726 234.414 52.2824 30.1152 23.4136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4858 11.2874 16.2836 50.5995 170.656

CAGE analysis