Hb_000689_050

Information

Type -
Description -
Location Contig689: 129827-133161
Sequence    

Annotation

kegg
ID rcu:RCOM_0482840
description hypothetical protein
nr
ID XP_002527364.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9S7V4
description HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1
trembl
ID B9SMZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0482840 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hva22-like protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54154: 129784-132824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000689_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003050_360 0.0825734781 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
3 Hb_005074_040 0.089279134 - - ATP binding protein, putative [Ricinus communis]
4 Hb_014497_010 0.0958030573 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
5 Hb_000996_080 0.099833544 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
6 Hb_006120_060 0.1007564386 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
7 Hb_004545_080 0.1032053382 - - protein with unknown function [Ricinus communis]
8 Hb_000076_250 0.10767492 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012180_060 0.1087209121 - - peptidase, putative [Ricinus communis]
10 Hb_007101_260 0.1111726627 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
11 Hb_003740_020 0.1123909887 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_008025_010 0.1132955866 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
13 Hb_000527_080 0.113893569 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_000566_010 0.1146963335 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_000357_070 0.1180472849 - - -
16 Hb_000032_410 0.1184141396 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
17 Hb_000327_360 0.1184999968 - - unnamed protein product [Coffea canephora]
18 Hb_021409_070 0.1187678932 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
19 Hb_002028_110 0.1191208743 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
20 Hb_000749_020 0.119647975 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000689_050 Hb_000689_050 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_005074_040--Hb_014497_010 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_014497_010--Hb_008025_010 Hb_000025_540 Hb_000025_540 Hb_014497_010--Hb_000025_540 Hb_002942_230 Hb_002942_230 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130 Hb_003020_250 Hb_003020_250 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_012807_150 Hb_012807_150 Hb_006120_060--Hb_012807_150 Hb_000622_330 Hb_000622_330 Hb_006120_060--Hb_000622_330 Hb_000638_060 Hb_000638_060 Hb_006120_060--Hb_000638_060 Hb_000283_140 Hb_000283_140 Hb_006120_060--Hb_000283_140 Hb_010050_020 Hb_010050_020 Hb_006120_060--Hb_010050_020 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.66089 1.32704 7.68244 7.00816 0.580248 0.865032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.922707 0.846911 0.818731 2.3756 5.41957

CAGE analysis